Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01019 ATGGTGGGTCCCATTCTTCGTTCTCTCTGGTCCTCCACTAGAAAATCCTTCTCCTGTTCTTCCTCTCCTCCTTTATCCCACTCGCGCTTCTTCTCACGCGCCTTCTCCGCCGCTCCCGCCGCCGCCCCCGCCGCCACAACCACAGTCTCCTCCCTCGACCCCAGCCGCCTCCGCAACGTGGCCGTGATCGCCCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACATCCCTCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCGCTTCCAAGGTTACGTCTGTTTCGTGGAAGGAGAATGAGCTGAACATGGTTGATACTCCTGGACATGCTGATTTTGGTGGTGAGGTTGAGCGTGTTGTTGGTATGGTTGAGGGAGCTATTTTGGTTGTTGATGCTGGGGAAGGTCCACTTGCACAAACGAAATTTGTTCTTGCAAAGGCCTTGAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGTTACTGAGGAGATATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCTTCCACCATGTTTACCAAGGATCCTCCTGCTGAGGCCAGAAATATGTCACTGTTGCTTGATGCTGTTGTAAGACATGTTCCACCACCAAATGCAAGCATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAACGAGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATACTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCATGGACTACGTAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACGAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATATCAGTTGCTGGTCTGTCAAGTCCATCAATAGGCCATACAGTGGCAACTGTGGAGATTATGTCTGCTTTGCCCACAATTGAATTGGACCCTCCAACTATTTCCATGACTTTTGGTGTAAATGACTCCCCATTGGCTGGTCGTGATGGCACTCATTTGACTGGGGGGAGAATTGGTGACCGACTGATGGCTGAAGCTGAAACGAACCTTGCTATAAATGTGCTTCCTGGCTTGTCAGAATCATTCGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATGTATAAAACTGAAAACAGTCAGAAGCTTGAGCCCGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAAGCCTTGTCTCATAGACGAGCGGAGGTTACGGACATGGGTCCTGTCTCAGGAACTGTTGGTCGAACTAGATTGTGTTTGACTTGTCCATCAAGGGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAGCTGGATTCATGCATCGTGCTTTCCATGCATATGAAAAATTTCGAGGCCCTCTTGGCAATGTCAGGAAAGGAGTACTGGTGTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGAACTCTTTTTGTAACTCCTGGAATGGAGACATATGA 1737 0.4865 MVGPILRSLWSSTRKSFSCSSSPPLSHSRFFSRAFSAAPAAAPAATTTVSSLDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEICDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTMFTKDPPAEARNMSLLLDAVVRHVPPPNASIDAPFQMLVSMMERDFYLGRILTGRIYSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISVAGLSSPSIGHTVATVEIMSALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENSQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLCLTCPSRGLVGYRSVFSSDTRGAGFMHRAFHAYEKFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGNSFCNSWNGDI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01019 578 CDD TypA_BipA 57 252 IPR047041 -
Pumo11g01019 578 SUPERFAMILY EF-G C-terminal domain-like 456 570 IPR035647 -
Pumo11g01019 578 Gene3D - 447 540 - -
Pumo11g01019 578 NCBIfam small GTP-binding protein domain 58 194 IPR005225 GO:0005525
Pumo11g01019 578 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 92 107 IPR031157 -
Pumo11g01019 578 SUPERFAMILY Translation proteins 202 358 IPR009000 -
Pumo11g01019 578 Gene3D Elongation Factor G (Translational Gtpase), domain 3 359 446 - -
Pumo11g01019 578 FunFam GTP-binding protein TypA 365 474 - -
Pumo11g01019 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 262 IPR027417 -
Pumo11g01019 578 FunFam GTP-binding protein TypA 56 253 - -
Pumo11g01019 578 FunFam Elongation factor family protein 254 358 - -
Pumo11g01019 578 CDD BipA_TypA_C 456 536 IPR035651 -
Pumo11g01019 578 Pfam Elongation factor Tu GTP binding domain 56 250 IPR000795 GO:0003924|GO:0005525
Pumo11g01019 578 Gene3D - 55 253 IPR027417 -
Pumo11g01019 578 FunFam GTP-binding protein TypA 447 541 - -
Pumo11g01019 578 Pfam Elongation factor G C-terminus 454 537 IPR000640 -
Pumo11g01019 578 Pfam Elongation factor Tu domain 2 274 347 IPR004161 GO:0005525
Pumo11g01019 578 Gene3D Translation factors 255 358 - -
Pumo11g01019 578 PRINTS GTP-binding elongation factor signature 99 107 IPR000795 GO:0003924|GO:0005525
Pumo11g01019 578 PRINTS GTP-binding elongation factor signature 119 129 IPR000795 GO:0003924|GO:0005525
Pumo11g01019 578 PRINTS GTP-binding elongation factor signature 59 72 IPR000795 GO:0003924|GO:0005525
Pumo11g01019 578 PRINTS GTP-binding elongation factor signature 171 180 IPR000795 GO:0003924|GO:0005525
Pumo11g01019 578 PRINTS GTP-binding elongation factor signature 135 146 IPR000795 GO:0003924|GO:0005525
Pumo11g01019 578 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 55 253 IPR000795 GO:0003924|GO:0005525
Pumo11g01019 578 CDD BipA_TypA_II 260 357 IPR047042 -
Pumo11g01019 578 SUPERFAMILY EF-G C-terminal domain-like 362 445 IPR035647 -
Pumo11g01019 578 CDD BipA_III 364 441 IPR047043 -
Pumo11g01019 578 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 54 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01019 Pumo-Chr11 37944640 37953736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01019 56 180 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 1.97e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01019 K06207 - gmx:100789218 1023.08