Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01010 ATGGATGTCTTCAACAACGATGATCACGACCATGACGAACAATTTGTTCGATACCACAACGACGTGAACAGAACAATATTGTACGTATCCATGGTTTCCTTCTCAACAGTCTTGTTTCTTCTCTTTGCCTTTTACCTCTACGCCAAGTGCATCCTAAGGAACCGCTCCCGCCACCGCGCCGCCATTCGCCGCCTCACCATCGCCGCGCTTCATGTCTCCGACATGGACGCCGCCGCACACCGCCACGCCGAACCGCCCCACGCGGGGCTCGACCCTGCCATCATAGCGTCGCTGCCGACCTTCACCGTCAAAGCAAAGGTTCTAGAAAGTGGCGGTGGCGCCTCCTCGGTGGTGGAGTGTGCCGTGTGCTTGAGTGCTCTGGAAGGTGAAGAGAAGGCCAAGTTGCTTCCCAACTGCAACCACTTTTTTCACGTGGATTGCATTGACACGTGGCTGGATTCCCACTCCACATGTCCTCTTTGTCGAGCCGGGGTCAAACCACGGCTCGAACCACAGGACCGTGAGGGTCCTGTTGGTCTTACTCTCAATGATGCACCAGCACTACTTAGTATTGGTGTTGATGGTAGTGGTAACAGCAATGGTGACGACGGTGAGTCGTCAAAAAATAATGGTTCTAATTCTAAGTTGAACTCGTTTAGAAGGATTCTCAGTAGGGAAAGATCTTCAAGAAGAATCCAACCGTCTGGGCATGATGATGAGGATGGTGGTGTTGATCAAGATTTGGAGAGACAATGA 756 0.5198 MDVFNNDDHDHDEQFVRYHNDVNRTILYVSMVSFSTVLFLLFAFYLYAKCILRNRSRHRAAIRRLTIAALHVSDMDAAAHRHAEPPHAGLDPAIIASLPTFTVKAKVLESGGGASSVVECAVCLSALEGEEKAKLLPNCNHFFHVDCIDTWLDSHSTCPLCRAGVKPRLEPQDREGPVGLTLNDAPALLSIGVDGSGNSNGDDGESSKNNGSNSKLNSFRRILSRERSSRRIQPSGHDDEDGGVDQDLERQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01010 251 MobiDBLite consensus disorder prediction 191 251 - -
Pumo11g01010 251 MobiDBLite consensus disorder prediction 220 251 - -
Pumo11g01010 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 168 IPR013083 -
Pumo11g01010 251 FunFam E3 ubiquitin-protein ligase ATL6 77 168 - -
Pumo11g01010 251 SUPERFAMILY RING/U-box 97 170 - -
Pumo11g01010 251 Pfam Ring finger domain 119 162 IPR001841 -
Pumo11g01010 251 CDD RING-H2_EL5-like 119 162 - -
Pumo11g01010 251 PANTHER RING-H2 FINGER PROTEIN ATL16 20 166 IPR044600 GO:0016567|GO:0016740
Pumo11g01010 251 MobiDBLite consensus disorder prediction 193 219 - -
Pumo11g01010 251 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Pumo11g01010 251 SMART ring_2 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01010 Pumo-Chr11 37877963 37878836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01010 4 251 C3H Transcription Factor Family AT2G42360 43.922 3.81e-58 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01010 K19038 - gmx:100811308 351.288