Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00999 ATGGAAATGGAAGATTTTTTATGGGGTGGTGGCATTGATGGGGATGATGCCCCTAAGAGAAAAAGTGATGGTTTTGAAGGAAGCAATGGTGTAATTGGAAGTGGGTGTGGTTCATCTTTCTCGCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCACCTGTGAAATTGGAGAGGAAGGGGGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAGGAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTGATTCCGGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAGCAGAATGCAGCACACGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAGGAGGGAGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGATTGTTGTCTGATATAAGACAAGCACTAGATGCTCTTCATCTTATGATAACAAGGGTAGATATTGCAACCTTGGAAGGCAGGATGAAGAATGTCTTTGTGATCATTAGCTGCAAAGAACAGGACTTCGAAGATGCTGCATACCGTCATTTTCTCGCCGGTTCTGTTCACCAAGCTCTTAAGTCTGTGCTCAATAGATTTTCTGTTTCAGAGGACATTTTAGGAACCAGGAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTCTTGTAA 780 0.4256 MEMEDFLWGGGIDGDDAPKRKSDGFEGSNGVIGSGCGSSFSLVLDRERGELVEAPVKLERKGVSTERSIEALKSHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKQNAAHACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMITRVDIATLEGRMKNVFVIISCKEQDFEDAAYRHFLAGSVHQALKSVLNRFSVSEDILGTRKRRRISIFSSSSLEDFL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00999 259 PANTHER TRANSCRIPTION FACTOR BHLH30 42 251 IPR045847 GO:0003700|GO:0006355
Pumo11g00999 259 Gene3D - 65 127 IPR036638 GO:0046983
Pumo11g00999 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 122 IPR036638 GO:0046983
Pumo11g00999 259 Pfam Helix-loop-helix DNA-binding domain 74 119 IPR011598 GO:0046983
Pumo11g00999 259 MobiDBLite consensus disorder prediction 1 28 - -
Pumo11g00999 259 CDD ACT_UUR-ACR-like 158 229 - -
Pumo11g00999 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Pumo11g00999 259 SMART finulus 76 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00999 Pumo-Chr11 37689531 37691540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00999 24 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 37.083 1.84e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g00999 HLH 6.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00999 - - gmx:100788819 441.425