Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00956 ATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGGGAACCTAAACAGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCGTTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGGTATAAAAATCGTGAATTGCAGTTAATGCGCTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGCTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTAAACTTGGTAATGGAATATGTCCCCGAGTCTATGTACCGAGTTATAAAGCACTACAATACTATAAACCAGAGAATACCTCTCATCTATGTGAAACTGTATACATATCAAATCTTTAGGGGATTAGCATATATCCATAGTGCACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCACCAAGTAAAGCTATGTGATTTTGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCATTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTCAATGAGCTTCGCGAGCCAAATGCCCGTCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTTAAACAGGAGTTAGCTGGAGCATCACCTGAACTGATCATTAGGCTCATCCCAGAGCATATTAGGCGGCAGAACGGTCTCAGCTTCCCTCATTCTGCCGGTACATAG 1125 0.4391 MSATVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPESMYRVIKHYNTINQRIPLIYVKLYTYQIFRGLAYIHSALGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFNELREPNARLPNGRPLPPLFNFKQELAGASPELIIRLIPEHIRRQNGLSFPHSAGT 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00956 374 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00956 374 CDD STKc_GSK3 29 321 IPR039192 -
Pumo11g00956 374 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00956 374 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Pumo11g00956 374 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Pumo11g00956 374 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 363 - -
Pumo11g00956 374 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Pumo11g00956 374 FunFam Shaggy-related protein kinase kappa 114 361 - -
Pumo11g00956 374 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00956 374 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Pumo11g00956 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Pumo11g00956 374 SUPERFAMILY Protein kinase-like (PK-like) 33 342 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00956 Pumo-Chr11 36689936 36693084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00956 38 323 MAP Kinase Gene Family AT3G59790 36.027 1.31e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pumo11g00956 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00956 K14502 K00924 gmx:100810924 747.658