Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00947 ATGGAAAGGCTCAGAGAGGTTTTCCTTCAGCCACCTCAAAGATCAACATTCCAAACAAGCACACAAGCTCCTCCACCAGTAGAAATTTCCAAATCAACAGCTTTGAGCAAGCTTAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATATTACAGAAACAATGCTGCAAGACCTTTGAAAGAGAAGGAGAGAGAAAAGGATGAAGATGGAAAGAGGTGTGCTATTTGCTTGGAAGACTTTGAGCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGGGGATTGCATAGTACCATGGCTAACAAGTAAGGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATAGGAAATCCTTCGTCCTTCAACAACAATGACATTGCCAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGCAGTATGATTTACTAA 510 0.4275 MERLREVFLQPPQRSTFQTSTQAPPPVEISKSTALSKLKKVVYDPPPKRYARRVSLYYRNNAARPLKEKEREKDEDGKRCAICLEDFEPSEEVMLTPCNHMFHGDCIVPWLTSKGQCPVCRFVICEIGNPSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGSMIY 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00947 169 MobiDBLite consensus disorder prediction 11 27 - -
Pumo11g00947 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 125 IPR013083 -
Pumo11g00947 169 SMART ring_2 80 120 IPR001841 -
Pumo11g00947 169 SMART ringv_2 79 121 IPR011016 GO:0008270
Pumo11g00947 169 MobiDBLite consensus disorder prediction 1 27 - -
Pumo11g00947 169 Pfam Ring finger domain 79 121 IPR001841 -
Pumo11g00947 169 ProSiteProfiles Zinc finger RING-type profile. 80 121 IPR001841 -
Pumo11g00947 169 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 36 122 - -
Pumo11g00947 169 SUPERFAMILY RING/U-box 67 127 - -
Pumo11g00947 169 FunFam RING/U-box superfamily protein 64 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00947 Pumo-Chr11 36468637 36470495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00947 35 166 C3H Transcription Factor Family AT3G58720 50.000 2.30e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00947 - - gmx:100810607 306.99