Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00919 ATGGCTACTACTACTACTAACATAATAGAGCAAGATTCTTCATCACGTGCCATGCACGTGCTCGACTACGCCACCACCACCGCCTCAGACGAGGACATTGAAGAAGACGAGGAGGAGGAGGAGGAGGAGGTAGAGGAGCACGGACACAATGAAAACGACTCCGCCGCCGCGGGGTGGTGGTTCGCGGCGGCGTGCGGCGGCGCGCGGCGGAGAGGGGGAGGCGCGCTGGGGCGGGTGCTGGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGGGTGTTCCTGCTAGTGTGCGCCGCGGGGCTGTTCGTCGACCCTCTCTTCTTCTACGCGCTCTCCGTCAGCGACTCGTGCATGTGCGTCTTCGTTGACGGGTGGCTCGCCGTTACCGTCACGGTGCTAAGGTGCATGACGGACGCGCTGCACGTGTGGAACATGGTTATAAGGAGCAAGATGGCGAAGCGGACTTTCGGCTTGGGCGCCGCGGTGGCCCCTGGCGGCTCCTCCGCCTCCTCCGCCGGACTCAGAGACACCCGGCCGCGCTCCGTCGCGCTCGGGTATCTCAAGTCACGGACGGGATTCTTTTTTGACTTGTTCGTTATTCTTCCTTTACCACAGATTGTGCTTTGGGTGGCAATCCCCTCCTTGTTGGAGAAAGGTTCAGTTACATTGGTGATGACAGTGTTCTTAATTATCTTTCTCTTCCAATACCTTCCCAAAATTTATCATTCGGTTTGCCATCTGCGACGCACGCAGAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATTGCCCTTAACATGATCGCGTATTTTGTTGCTTCCCATGCAGCAGGGGCGTGCTGGTACTTGCTGGGGATACAAAGATCAGCCAAGTGTCTGAGAGTGCAGTGCGAGAAAACAAGTGGCTGTGGCATGAAAATCCTGTCTTGTCAAAGCCCTATATACTACGGAAGCAGCAATTTAATAGTTAGGGATGGAGCAAGGTTGGCATGGGCAGAGAACAGGGAAGTGAGGCACACATGCCTGAATGGTCCTGACAACTACAACTATGGAGCTTACAGATGGACCGTTCAGCTCGTCACTAATGACAATCGGTTGGAGAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTAAGCACTTTTGGAAACCTAGAGAGTACAACTGAATGGCTGGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAATATTGAATGGTGGATGAGGAAACGACGTTTGCCACAAGGGTTTAGACAACGCGTGCATAACTATGAGAGGCAACGTTGGGCTGCTATGCGTGGGGTTGATGAATGCGAGATGACCAAAAATCTACCTGAGGGATTAAGAAGAGACATCAAGTACCATCTTTGTCTAGACTTGGTGAGACAGGTGCCACTATTTCAACACGTGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACCAAGGGAGAAACAATAGCTAAAGAAGGAGATCCAGTTCAGAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAAGTCCTAAGGGATGGTGTGAAGAGTTGCTGCATGTTAGGTCCAGGGAACTTCAGTGGGGACGAGCTCCTTTCATGGTGCTTGAGGAGACCCTTCATAGAACGTCTTCCACCATCTTCATCCACACTCATCACACTGGAAACCACCGAGGCATTCGGCCTCGAAGCCGAGGACGTGAAGTATGTGACACAACATTTCAGGTACACATTTGTTAAGGAGAAGGTGAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCTTGGAGGAGGTACAAGCATAGGTTGACTTTGACTTCATTGTCCTTTATAAGACCTAGGAGGCCCTTGTCACGGTCTTCTTCCATGGGAGAGGACAGGCTTCGCCTCTACACTGCTTTGTTAACTTCCCCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2100 0.509 MATTTTNIIEQDSSSRAMHVLDYATTTASDEDIEEDEEEEEEEVEEHGHNENDSAAAGWWFAAACGGARRRGGGALGRVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHVWNMVIRSKMAKRTFGLGAAVAPGGSSASSAGLRDTRPRSVALGYLKSRTGFFFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRSAKCLRVQCEKTSGCGMKILSCQSPIYYGSSNLIVRDGARLAWAENREVRHTCLNGPDNYNYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVHNYERQRWAAMRGVDECEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHVDDLVLENICDRVKSLIFTKGETIAKEGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00919 699 SUPERFAMILY cAMP-binding domain-like 428 616 IPR018490 -
Pumo11g00919 699 Gene3D Helix hairpin bin 427 493 - -
Pumo11g00919 699 ProSiteProfiles cAMP/cGMP binding motif profile. 502 612 IPR000595 -
Pumo11g00919 699 Pfam Cyclic nucleotide-binding domain 523 610 IPR000595 -
Pumo11g00919 699 MobiDBLite consensus disorder prediction 27 51 - -
Pumo11g00919 699 CDD CAP_ED 502 608 IPR000595 -
Pumo11g00919 699 Gene3D Jelly Rolls 500 618 IPR014710 -
Pumo11g00919 699 FunFam Cyclic nucleotide-gated ion channel 1 429 493 - -
Pumo11g00919 699 SUPERFAMILY Voltage-gated potassium channels 82 423 - -
Pumo11g00919 699 Pfam Ion transport protein 90 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo11g00919 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 664 - -
Pumo11g00919 699 MobiDBLite consensus disorder prediction 28 47 - -
Pumo11g00919 699 FunFam cyclic nucleotide-gated ion channel 4 500 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00919 Pumo-Chr11 33331796 33343241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00919 64 698 Ion Channels AT5G54250 78.505 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00919 K05391 - gmx:100796761 1226.85