Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00891 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTTCCCGACGCCACCTTCGGCGTCCCTTCCTCCGCCTTCACGTGGCCCCCCAACGCCCTCAACGCCTCTTCCAATGTCGGTGTTGAAATTGATGGCTCATTGGGGGATTCTGACGGTCTCAAAGAGTCTGGCTCAAAGAAAAGGGTTAGGTCCGAGTCATGTGCTGCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAGGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCCAAAACGGACAAGGCTGCTATCCTGATGGATGCTGTCCGAATGGTGACCCAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACACTAATCAGGGTCTCCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGAGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGCTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCTAGTTTCATGCCTCCCCCTGCTGCAATTCCTGCCGCATTTGCGGCGCAAGGCCAAGTCCATGGCAACAAGATGGTACCTTTTATTAGCTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTTCAGTGGATACCTCACAGGATCATGTGCTCCGTCCACCAGTTGCCTAA 711 0.5091 MVSRENTNWLFDYGLIDDIPVPDATFGVPSSAFTWPPNALNASSNVGVEIDGSLGDSDGLKESGSKKRVRSESCAASSSKACREKLRRDRLNDKFVELGSILEPGRPAKTDKAAILMDAVRMVTQLRGEAQKLKDTNQGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQVHGNKMVPFISYPGVAMWQFMPPASVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00891 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Pumo11g00891 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Pumo11g00891 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Pumo11g00891 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 145 IPR036638 GO:0046983
Pumo11g00891 236 FunFam Transcription factor bHLH34 66 124 - -
Pumo11g00891 236 CDD bHLH_AtILR3_like 80 155 - -
Pumo11g00891 236 SMART finulus 81 132 IPR011598 GO:0046983
Pumo11g00891 236 Coils Coil 123 178 - -
Pumo11g00891 236 Gene3D - 64 124 IPR036638 GO:0046983
Pumo11g00891 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pumo11g00891 236 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00891 Pumo-Chr11 32863457 32867654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00891 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.130 2.20e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g00891 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00891 - - gmx:100788858 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00891 11 32863457 32867654 Pumo11g00891 11 32863457 32867654 ECH
Pumo4g03235 4 66660219 66662380 Pumo11g00891 11 32863457 32867654 PCT