Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00887 ATGGAGAAAGAAGAGAAAAAGAAGATAAAGGGAAACATTAAGGATAATATGCCAACAGTTTGGTTCTCTCTGAAGAAGTCTTTACACTGCAAATCTGAGCCATCCGATGTTCATGACCCCAAAACAAGGAAGCACTTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCCAGGTCCATAGCAAATCTCAAAGATGTCATTCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCCATAACTCATGAGGTGATTTTGAGCAACTCAAGGTGTGAGCTGAAGATAACTGGGTATGGAGGGTTCCAAGAAGGGGTTGGAAGTGGTGGTAGCAATGGTGGTAGTGGTGGTTCAACTTTTGTGGGGACTTTGAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCCACAATGCACTACTTTAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTCTTATCAGATAAAGAAGGGTCTGGTCCTCATGGTGCTGGACTTCATCCTAGCAATAGGTTGTCTCTTGAGACAGATTCTAATGGCTCTTCAACTGTGACCTGCCACAAATGTGGAGAGCAATTTAACAAATGGGATGCTGCTGAAGCTCATCATCTGTCCAAGCATGCTGTGACGGAACTTGTGGAGGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGTTGGTTAAAGTCTGAAAACCAGTGTGGTAGAATTGAAAGAGTGTTGAAGGTTCACAACATGCAAAAGACTCTTGCAAGATTTGAAGAATACAGGGAGATGGTGAAGATCAAAGCCAACAAACTCCAGAAGAAGCATCCAAGATGTCTGGCTGATGGGAATGAGCTATTGAGGTTCTATGGCACCACTGTTTCATGCTCTCTTGGCCTCAATGGCTCTTCTAGCCTCTGCCTATCAGAAAAGTGCTGTGTTTGCAGAATCATAAGGAATGGTTTTTCAGCCAAGAAGGAGCTCAAGGGTGGCATTGGAGTCTTCACAACATCCACAAGTGGAAGAGCTTTTGAATCCATAGAGATCATTGGTGAGGAACCATCACTGAGAAAAGCACTGATAGTATGCAGAGTAATTGCTGGCAGGGTTCATAGGCCACTTGAGAACATTCAGGAAATGGCAGCACAAACAGGATTTGACTCATTGGCTGGGAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1320 0.4492 MEKEEKKKIKGNIKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGSNGGSGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGPHGAGLHPSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKANKLQKKHPRCLADGNELLRFYGTTVSCSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIIGEEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00887 439 MobiDBLite consensus disorder prediction 123 198 - -
Pumo11g00887 439 MobiDBLite consensus disorder prediction 156 170 - -
Pumo11g00887 439 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Pumo11g00887 439 MobiDBLite consensus disorder prediction 124 138 - -
Pumo11g00887 439 Gene3D - 219 438 - -
Pumo11g00887 439 FunFam C2H2-like zinc finger protein 229 438 - -
Pumo11g00887 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 20 437 - -
Pumo11g00887 439 SUPERFAMILY ADP-ribosylation 230 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00887 Pumo-Chr11 32796532 32799206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00887 17 439 C2H2 Transcription Factor Family AT5G54630 68.683 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g00887 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00887 - - gmx:100785097 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00887 11 32796532 32799206 Pumo11g00887 11 32796532 32799206 ECH