LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g00881	ATGGCTTCTAATTCCATCATCCAATGTAGCTCCTCTTCATCTCATGCGATCTGGACATATGACGTGTTTGTGAGCTTCCGTGGTGAAGACACACGCTACAACTTCACTGCTTTTCTCTTTGATGCTCTCAGTAAAAATGGAATCGATGCCTTCAAAGATGATACACATCTTAAGAAAGGCGAATTCATAGCACCTGAGCTGCTACAGGCCATTCAAGGGTCTCGCCTTTTCATGGTGGTCTTCTCAAAGAACTATGCTTCCTCAACTTGGTGCTTGCGTGAACTTGCACACATCTGCAACTGCATTGACTCATCGCCAAGACATCTTCTGCCTATTTTTTATGATGTTGATCCATCAGAGGTGCGGAAACAGAGTGGTTATTATGAGATAGCCTTTGCTGAACACGAAGAAAGATTCAGAGAAGATAAAGAGAAGATGGAAGAAGTGCAAAGATGGAGGGCAGCTCTGACTCGTGTGGCCAATCTCTCTGGCTGGGATATCAGAAATAAGCCACAACCTGCACAGATTGAACCAATTGTTCAAAGAATAAAAAATATATTGGGTCCCAAATTTTCAACTCTTCCAAATGGTAGTTTAGTTGGGATGGAATCCCGTGTTGAAGAATTAAAAAGGTGTTTAAATTTGGGGTCAGTTAATGATGTTCGAGTTGTTGGAATCAGTGGGATGGGGGGAATAGGAAAGACAACTCTTGCCCGTGCCTTATACGAAAGAATCTTTGATCAATATGATTTTCATTGTTTTATTGATAATGTAAGCAAAATTTATCGAGATTCTAGTACATTAGGTGTACAGAAACAATTACTTTCTCAGTCTCTAAATGATAAAAATTTAGAGATTTGCAATGTTTCTGATGGAACATATTTGATATGGACTATGCTACGCAATAAAAGGGGACTTATAGTTCTTGATAACGTTAGTCAAGTTGAACATCTACATATGTTTACAGGCAGTAGAGAGACTCTATTACGTGAATGCCTAGGAGGAGGGAGCAGGATCATCATAATTTCTAGGAATAAACATATATTTAAGACACATGGAGTCGATGATAATTACCAGGTCCACCCATTGAATGAGGAAAATGCTATCCAGTTGTTCTGTAGAAATGCTTTCAAAGGTAATTATATTGTGAATGATTATGAACAGCTGACACGTGATGTACTATCACATGCTCAAGGCCTTCCCTTGGCAATTAAAGTAATAGGATCATCTTTGTTTGGTAAAAATATGTCAGAGTGGAGAAGTACATTGGCTAGTCTAGGAGGCAATAAAAGTAGAGACATTATGGATGTGCTGCGAATAAGTTATAAAGATTTGGGTGACATAGACAGGGAAATATTTCTAGATATTGCTTGCTTCTTCCCTAGTAATTCCAAGAAATATGTGAAGGAAATTTTAGATTTTCGTGGATTTTATCCTGAAAATGGCCTACCAAATCTTGTTGATAAATCACTCATAACAATTAATAATGGGTGGATTGAAATGCATGGCTTGCTGAGAGATTTGGGCAGGTGTATTGTTCGAGAAAAATCACCTAAAAAACCAAGAAAGTGGAGTAGATTGTGGGATTATGAAGATCTCTACAAAGTTATGTCGGACAATATGGAAGCAGAAAATCTTGAAGGCATAGTTGTTGACTATACTCCAAAGAGGTTTCATGAAACAACAATGAGAGTTGATGCTCTGTCAAAAATGAGAAACCTTAAGTTGCTCATACTTCCCAACTATCCACAAAAACTTGTTGAGTTGCTCCTTCGTGAGAGTAGCATCAAGCAATTATGGGAAGGCACACAGCCTCTACCCAATTTGAGATATTTGGATCTCTCTTACTGCAAAAGTCTAATTGAGGTGCCAAATTTTGGTGAGGCACTAAATCTTGAGAGTCTAGAACTCCAAGGATGTATACGACTCAGGCAATTCCATCCATCCATTGGTTTTCCTAGAAATCTTACTCTGCTGAATTTGGAAGGCTGTGAAAGTCTTGTAGGGATACCACCTTTTGTAGAGGCCATAAATCTTGAAATTTTAAATCTCGGAGGATGTATACAACTTAGGGAGATACACCCATCCATTGGTCATCTAAGAAAGCTTGCTGTTTTAAATTTGAAAGATTGCAAAAGTCTAGTAAGCTTACCGAACAGCATATTGGGACTCAGTTCTCTTGAATACCTATGTCTTTCCGGCTGTTCAAAACTGTATAACATCCATTTATTAGAAGAACCAACGGATGGTAGGCATTTGAAGAAGCTTTGTATAGGTGAAGCTCCCAGTCGTTCCCAATCAATATCCTCATTCCTCAAAAAGTGGCTTCCGTGGCCTTCCATGGGCTTCGTCAAAAGCTTTGAGGATGGACATAAAGATTCAGTTAGTTGTTTGTTGCCTTCCTTGCCTATGTTCTCATGTATGCGTCAACTTGATCTAAGTTTCTGCAATTTACTTAAAATCCCTGATGCTTTTGGAAATTTCCATTGCTTAGAAAAGCTATGTTTAAAGGGAAACAATTTTGATACTTTGCCCAGCCTCAAGGAGCTTTCCAAATTGTTACATTTAAACTTACAACACTGCAAGCGATTGAAATATTTGCCTGAGCTCCCTTCACGAACTGATTTGCAACCACCAGGATACGAGCTGTCAGCGGATATTATACAATGTAATTGTGAAGAGTCATTATCAGGAATAAATATTTTCAACTGCCCAGAATTAGATGAGAGGGATCGCTGCACCAGCATGTGTCTTTCATGGAATATGCAAATTGTTCAGGCGCTCCACAAACACAAACAACATCATTGGCAGTTCTGGCCTCCAGACATTTCAAGTATTATTCCAGGAAGTGAAATACCAAGGTGGTTCCACAAACAGCATGTGGCCATCGGCAATGTGATAAACATAGACACATCTCACTTTATGCAGCATGACAATAATTGTATAGCCATTGCGTGTAGTGTAATATTTGTGGTACATAAAGAAACAAGAATGGACCCTCCAGAAACAGAACGCCCTCCAGAAACAGAACCACATGACACTGTTGGTATTCCACTTCTATTCCGTAGAGATCTAGTCACGGATAAATCGGATCACATGTGGGTATTCTATTTCACTCCACCACCTTCCAATGAATATGGTGATGAGTTGAAATTGAGATTTATATTATGTGATGGTCATCAATATTTTGATCTTGAGGTGAAGAAGTATGGGTATCGTTGGGTATATGAAGAGGATCTGGAACTATCAAACTTAACAATGATGAACAGCAAAAATTCGTTGCCTCGGAAGCGCAAGTTTTTGGCAATAGAAGAAAACAAGTAG	3324	0.389	MASNSIIQCSSSSSHAIWTYDVFVSFRGEDTRYNFTAFLFDALSKNGIDAFKDDTHLKKGEFIAPELLQAIQGSRLFMVVFSKNYASSTWCLRELAHICNCIDSSPRHLLPIFYDVDPSEVRKQSGYYEIAFAEHEERFREDKEKMEEVQRWRAALTRVANLSGWDIRNKPQPAQIEPIVQRIKNILGPKFSTLPNGSLVGMESRVEELKRCLNLGSVNDVRVVGISGMGGIGKTTLARALYERIFDQYDFHCFIDNVSKIYRDSSTLGVQKQLLSQSLNDKNLEICNVSDGTYLIWTMLRNKRGLIVLDNVSQVEHLHMFTGSRETLLRECLGGGSRIIIISRNKHIFKTHGVDDNYQVHPLNEENAIQLFCRNAFKGNYIVNDYEQLTRDVLSHAQGLPLAIKVIGSSLFGKNMSEWRSTLASLGGNKSRDIMDVLRISYKDLGDIDREIFLDIACFFPSNSKKYVKEILDFRGFYPENGLPNLVDKSLITINNGWIEMHGLLRDLGRCIVREKSPKKPRKWSRLWDYEDLYKVMSDNMEAENLEGIVVDYTPKRFHETTMRVDALSKMRNLKLLILPNYPQKLVELLLRESSIKQLWEGTQPLPNLRYLDLSYCKSLIEVPNFGEALNLESLELQGCIRLRQFHPSIGFPRNLTLLNLEGCESLVGIPPFVEAINLEILNLGGCIQLREIHPSIGHLRKLAVLNLKDCKSLVSLPNSILGLSSLEYLCLSGCSKLYNIHLLEEPTDGRHLKKLCIGEAPSRSQSISSFLKKWLPWPSMGFVKSFEDGHKDSVSCLLPSLPMFSCMRQLDLSFCNLLKIPDAFGNFHCLEKLCLKGNNFDTLPSLKELSKLLHLNLQHCKRLKYLPELPSRTDLQPPGYELSADIIQCNCEESLSGINIFNCPELDERDRCTSMCLSWNMQIVQALHKHKQHHWQFWPPDISSIIPGSEIPRWFHKQHVAIGNVINIDTSHFMQHDNNCIAIACSVIFVVHKETRMDPPETERPPETEPHDTVGIPLLFRRDLVTDKSDHMWVFYFTPPPSNEYGDELKLRFILCDGHQYFDLEVKKYGYRWVYEEDLELSNLTMMNSKNSLPRKRKFLAIEENK	1107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g00881	1107	Gene3D	-	362	446	IPR042197	-
	Pumo11g00881	1107	Gene3D	-	16	190	IPR035897	-
	Pumo11g00881	1107	Gene3D	Ribonuclease Inhibitor	787	936	IPR032675	-
	Pumo11g00881	1107	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	456	IPR027417	-
	Pumo11g00881	1107	ProSiteProfiles	TIR domain profile.	18	187	IPR000157	GO:0007165
	Pumo11g00881	1107	PRINTS	Disease resistance protein signature	299	313	-	-
	Pumo11g00881	1107	PRINTS	Disease resistance protein signature	223	238	-	-
	Pumo11g00881	1107	PRINTS	Disease resistance protein signature	604	620	-	-
	Pumo11g00881	1107	PRINTS	Disease resistance protein signature	397	411	-	-
	Pumo11g00881	1107	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	188	-	-
	Pumo11g00881	1107	SMART	till_3	19	162	IPR000157	GO:0007165
	Pumo11g00881	1107	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	165	IPR035897	-
	Pumo11g00881	1107	Pfam	TIR domain	20	188	IPR000157	GO:0007165
	Pumo11g00881	1107	Gene3D	-	191	355	IPR027417	-
	Pumo11g00881	1107	ProSiteProfiles	Leucine-rich repeat profile.	830	851	IPR001611	GO:0005515
	Pumo11g00881	1107	SUPERFAMILY	L domain-like	501	923	-	-
	Pumo11g00881	1107	Gene3D	Ribonuclease Inhibitor	545	776	IPR032675	-
	Pumo11g00881	1107	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	672	IPR044974	GO:0006952
	Pumo11g00881	1107	Pfam	NB-ARC domain	204	430	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g00881	Pumo-Chr11	32707397	32719295	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g00881	200	771	WRKY Transcription Factor Family	AT5G45050	30.271	2.69e-70	255

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g00881	-		-	gmx:100814717	1536.55