Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00878 ATGGTGAGAACCCCGTGCATAAAGAAAAGTGGACTGAAGAAAGGAACGTGGACACCAGAGGAAGACAAGAAGTTAATCGATTATATTACTAGATATGGCCACTGGAACTGGCGCCTTCTCCCCAAGTTCGCAGGTCTTGCGATATGTGGAAAGAGTTGCAGACTTAGATGGTTGAATTACCTAAGGCCAAACCTCAAAAGTGGGAACTACACTCAACAAGAGGAGGAAACTATTATCAAGCTGCACCGAAATCTAGGTAGCAGATGGTCTGCCATAGCAGCTCAGCTGCCAGGATTAACCGACAATGAAATAAAGAACTACTGGAACACTAACATCAAGAACCGGTCACAACAGGACTCAGAGTCAGAGGAACTATCCTCAACTGAACCAACTGCAAATCTTTTCCAAAGCTTTCATACCACGCAAGATTCCTCTCCATTCTCCTCCACAAGCAAAGATTATACCACTGTTACAAGCAAAGAAAATCTGGCTCTGGAAGAAGATGATGAATGTGCCTTTTGGGATAATGACACGGATCTTATTATGAGTGAAAACTTCTCGTTAGAACCGTATATGCTTGATCTTTCCTACGTCCCTTATGAGCCTGAGTACTTTGGTCCAGTCTTTGATGGAGAACTTTGGAGTCATGATAACACCACGCAAGATTATTCATCCTCCTCCACAAGCACTGAGTATACCACTACTACTAGCTAG 714 0.4342 MVRTPCIKKSGLKKGTWTPEEDKKLIDYITRYGHWNWRLLPKFAGLAICGKSCRLRWLNYLRPNLKSGNYTQQEEETIIKLHRNLGSRWSAIAAQLPGLTDNEIKNYWNTNIKNRSQQDSESEELSSTEPTANLFQSFHTTQDSSPFSSTSKDYTTVTSKENLALEEDDECAFWDNDTDLIMSENFSLEPYMLDLSYVPYEPEYFGPVFDGELWSHDNTTQDYSSSSTSTEYTTTTS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00878 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo11g00878 237 Gene3D - 69 136 - -
Pumo11g00878 237 CDD SANT 69 112 IPR001005 -
Pumo11g00878 237 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Pumo11g00878 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g00878 237 CDD SANT 16 61 IPR001005 -
Pumo11g00878 237 SMART sant 66 114 IPR001005 -
Pumo11g00878 237 SMART sant 13 63 IPR001005 -
Pumo11g00878 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Pumo11g00878 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo11g00878 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo11g00878 237 FunFam MYB-related transcription factor 13 66 - -
Pumo11g00878 237 Gene3D - 13 66 - -
Pumo11g00878 237 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo11g00878 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo11g00878 237 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00878 Pumo-Chr11 32582761 32586270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00878 1 185 MYB Transcription Factor Family AT2G31180 47.500 1.14e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g00878 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00878 K09422 - gmx:100777621 306.219