Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00875 ATGGTTAGAACCCCGTGCATAAGCAAAAGTGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTAATCGATTATATTACTAGATATGGCCACTGGAATTGGAGCCTACTCCCCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACATAGGTGGATGAATTACCTAAGGCCAAACCTCAAAAGAGGGAACTACACTCAAAAAGAGGAGGAAACTATTATCAAGCTGCACCGAAATCTGGGTAGCAGATGGTCTGCCATAGCAGCTCAGCTGCCAGGAAGAACGGACAATGAAATAAAGAACTACTGGAACACTAACCTCAAGCACCGGTCACAACAGGACTCAGAGTCAGAGGACCTATCCTCAACTGAACTAACTGCAAATCTTTTCCAAAGCTTTCATACGACGCAAGATTCCTCACCAATTTCTCAGCATTCATCCTCCAACACAAGCACAGACTATACCACTGTTACAAGCAAAGAAAATCTGGCTCTGGAAGAAGAAGATGAATGTGCCTTTTGGGATGCTGACACGGATCTTATTATGAGTGAAAACTTCTCGTTAGAACCGTATATGCTTGATCTTTCCTTTGTCCCTTATGAACCTGAGTACTTTGGTCCAGTCTTTGATGCAGAACTTTGGAGTCATGATAACACCACGCAAGATTATTCATCCTCCTCCACAAGCACCGAGTATACCACTGCTACTAGCAATGAAAATCTCGTTTTGGAAGAGAATACCACTGTTACCAGCAACGAAAAGCTAGTTCTGGAGGAGTATACCACTGTTACAAGCAACGAAAATCTGGTTCTGGAAGATATATTTGCCTCTTGGGATGCAACCCGAGTAAGGATGAATTTGCCTTGTGGGATGTAG 891 0.4366 MVRTPCISKSGLKKGTWTPEEDKKLIDYITRYGHWNWSLLPKFAGLARCGKSCRHRWMNYLRPNLKRGNYTQKEEETIIKLHRNLGSRWSAIAAQLPGRTDNEIKNYWNTNLKHRSQQDSESEDLSSTELTANLFQSFHTTQDSSPISQHSSSNTSTDYTTVTSKENLALEEEDECAFWDADTDLIMSENFSLEPYMLDLSFVPYEPEYFGPVFDAELWSHDNTTQDYSSSSTSTEYTTATSNENLVLEENTTVTSNEKLVLEEYTTVTSNENLVLEDIFASWDATRVRMNLPCGM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00875 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Pumo11g00875 296 CDD SANT 69 112 IPR001005 -
Pumo11g00875 296 FunFam MYB-related transcription factor 13 66 - -
Pumo11g00875 296 CDD SANT 16 61 IPR001005 -
Pumo11g00875 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo11g00875 296 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo11g00875 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g00875 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo11g00875 296 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo11g00875 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo11g00875 296 Gene3D - 69 134 - -
Pumo11g00875 296 SMART sant 13 63 IPR001005 -
Pumo11g00875 296 SMART sant 66 114 IPR001005 -
Pumo11g00875 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo11g00875 296 Gene3D - 6 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00875 Pumo-Chr11 32494384 32498985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00875 1 190 MYB Transcription Factor Family AT2G31180 48.744 3.58e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g00875 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00875 K09422 - gmx:100778518 316.62