Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00868 ATGCTTGATGTTAGGCCTGGTGAGGCTTCGGCTGTGAACTTCTCTTTGCAACTCCATCACACGGCTGAGGAGAGTGTTGATGTGAGTAATCCAAGGAATGGACTTTTGAGATTAGTGAAATCACTTTCTCCCAAGGATGATATTGTCAATATTATTGCTTGCGAAGGGAAGGAAAGGGTAGTGAGAGATGAACTGTTAGGGAAGTGGAAGTCTATGTTGACAATGGCTAGTTTTTGTCAATATCCTTTGAGTTCTTATGTGAATTCTTTCATAAGAAGCCTGTTGAGGTGCTATTCAGAACAATATAACCTTGTGGAGAAGGGTGGGGCCATGTTGTTGGGGGTGCAAGGACAGAAATTTCATTTCTGCTTCAGCTCAGCATTGATTACATGCAGAAGAATTACTTTTGAGCTTAGAGAATCTACTCCAAATCTATATCCATTTCCGCATTCCAAGATGGCGAAAGGGACAAATTAA 477 0.413 MLDVRPGEASAVNFSLQLHHTAEESVDVSNPRNGLLRLVKSLSPKDDIVNIIACEGKERVVRDELLGKWKSMLTMASFCQYPLSSYVNSFIRSLLRCYSEQYNLVEKGGAMLLGVQGQKFHFCFSSALITCRRITFELRESTPNLYPFPHSKMAKGTN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00868 158 ProSiteProfiles GRAS family profile. 1 127 IPR005202 -
Pumo11g00868 158 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 114 IPR005202 -
Pumo11g00868 158 Pfam GRAS domain family 47 120 IPR005202 -
Pumo11g00868 158 Pfam GRAS domain family 1 45 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00868 Pumo-Chr11 32230653 32231266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00868 2 114 GRAS Transcription Factor Family AT5G48150 43.114 1.84e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo11g00868 GRAS 2e-13 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00868 - - mesc:110601590 149.058