Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00846 ATGGTGAGAACCCCGTGCATAAGCAAAAGTGGACTGAAGAAAGGAACATGGACACAAGAGGAAGACAAGAAGTTAATCGATTATATTACTAAATATGGCCACTGGAATTGGAGCCTACTCCCCAAATGGTCTGCCATTGCTGCTCAGCTGCCAGGAAGAACCGACAATGAAATAAAGAACTACTGGAACACCAACCTCAAGCACAGGTCACAAGAGGACTCAAAGGACCAATCCTCAACTGAACCAAACGCAAATCCTTCCCAAAGCTTTCAAACCATGCAAGATTCCTCTCCACTCTCCTCCACAAGCACAGACTATACCACTGTTACAAGCAAAGAAAATCTGGCTCTGGAATGTGCCTTTTGGGATGCTGACACGGATCTTATTATGAGTGAAAACTTCTCGTTAGAACCGTATATGCTTGATCTTTCCTTTGTCCCTTATGAACCTGAGTACTTTGGTCCAGTCTTTGATGCAGAACTTTGGAGTCATGATAACACCACGCAAGATTATTCATCCTCCTCCACAAGCACCGAGTATACCACTGCTACTGGCTAG 558 0.4444 MVRTPCISKSGLKKGTWTQEEDKKLIDYITKYGHWNWSLLPKWSAIAAQLPGRTDNEIKNYWNTNLKHRSQEDSKDQSSTEPNANPSQSFQTMQDSSPLSSTSTDYTTVTSKENLALECAFWDADTDLIMSENFSLEPYMLDLSFVPYEPEYFGPVFDAELWSHDNTTQDYSSSSTSTEYTTATG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00846 185 ProSiteProfiles Myb-like domain profile. 9 66 IPR001005 -
Pumo11g00846 185 Pfam Myb-like DNA-binding domain 14 66 IPR001005 -
Pumo11g00846 185 SUPERFAMILY Homeodomain-like 3 71 IPR009057 -
Pumo11g00846 185 CDD SANT 16 66 IPR001005 -
Pumo11g00846 185 Gene3D - 16 96 - -
Pumo11g00846 185 MobiDBLite consensus disorder prediction 68 105 - -
Pumo11g00846 185 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 162 - -
Pumo11g00846 185 SMART sant 13 68 IPR001005 -
Pumo11g00846 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 70 IPR017930 -
Pumo11g00846 185 MobiDBLite consensus disorder prediction 77 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00846 Pumo-Chr11 30526975 30531408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00846 1 69 MYB Transcription Factor Family AT4G21440 40.870 1.92e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo11g00846 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00846 K09422 - gmx:100778518 155.606