Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00845 ATGGTTAGAACCCCGTGCATAAGCAAAAGTGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTAATCGATTATATTACTAGATATGGCCACTGGAATTGGAGCCTACTCCCCAAGTTCGCAGGGAATATTATATATGCAAGATGGTCTGCCATAGCAGCTCAGCTGCCAGGAAGAACGGACAATGAAATAAAGAACTACTGGAACACTAACCTCAAGAAACGGTCACAACAGGACCCAGAGTCAGAGGAACTATCCTCAACTGAACCAACCGCAAATCTTTTCCAAAGCTTTCATACCACGCAAGATTCCTCACCAATTTCTCAGCATTCATCCTCCAACACAAGCACAGACTATACCACTGTTACAAGCAAAGAAAATCTGGCTCTGGAAGAAGAAGATGAATGTGCCTTTTGGGATGCTGACACGGATCTTATTATGAGTGAAAACTTCTCGTTAGAACCGTATATGCTTGATCTTTCCTACGTCCCTTATGAGCCTGAGTACTTTGGTCCAGTCTTTGATGCAGAACTTTGGAGTCATGATAACACCACGCAAGATTATTCATCCTCCTCCACAAGCACCGAGAATGCCAATACCACTGTTACCAGCAACGAAAAGCTAGTTCTGGAGGAGTATACCACTGTTACAAGCAACGAAAATCTGGTTCTGGAAGATATATTTGCGTCTTGGGATGCAACCCGAGTAAGGATGAATTTGCCTTGTGGGATGTAG 744 0.4368 MVRTPCISKSGLKKGTWTPEEDKKLIDYITRYGHWNWSLLPKFAGNIIYARWSAIAAQLPGRTDNEIKNYWNTNLKKRSQQDPESEELSSTEPTANLFQSFHTTQDSSPISQHSSSNTSTDYTTVTSKENLALEEEDECAFWDADTDLIMSENFSLEPYMLDLSYVPYEPEYFGPVFDAELWSHDNTTQDYSSSSTSTENANTTVTSNEKLVLEEYTTVTSNENLVLEDIFASWDATRVRMNLPCGM 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00845 247 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 51 197 - -
Pumo11g00845 247 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Pumo11g00845 247 MobiDBLite consensus disorder prediction 103 123 - -
Pumo11g00845 247 ProSiteProfiles Myb-like domain profile. 9 75 IPR001005 -
Pumo11g00845 247 CDD SANT 16 75 IPR001005 -
Pumo11g00845 247 SMART sant 13 77 IPR001005 -
Pumo11g00845 247 Pfam Myb-like DNA-binding domain 14 75 IPR001005 -
Pumo11g00845 247 Gene3D - 11 80 - -
Pumo11g00845 247 MobiDBLite consensus disorder prediction 74 93 - -
Pumo11g00845 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 79 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00845 Pumo-Chr11 30509470 30513403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00845 1 87 MYB Transcription Factor Family AT3G61250 44.094 5.72e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo11g00845 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00845 K09422 - gmx:100778518 172.94