Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00841 ATGGCTTTTCCAAACCAATCCATGTCATCAGAGTCTCCCCAGAGAAAGATTGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAGTCGACAAGTTACCTTTTGCAAGCGCAGAAATGGATTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGCGTCAAAGCTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGATTCATCCAGTGGTGGATCTGTATCTGAGGTTAATGCTCAGTATTTTAATCAATCTTTTATAATTAGTATTATTCCAAACTTTGGCAACAATGTTTCGAATTACAGGCAAATGATGGGTGAGGCTTTGAGCACTATGAATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGTTCCAAGAAGAATGAGATGCTGTTTGCAGAAGTTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAATAGCAACCAGCTTCTGAGAGCAAAGATATTAGAAAGAGAGAGGAGTCAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTATGAATCCATGCAATCTCAGTTTGACTCTCGCGGCTTCTTCCAAGTGACAGGATTACAACCCAATAATGATAATCAGTATGCTGGACAAGACCAGATGTCCCTTCAATTTGTAAGCTTTTCCCTTGCTAGGCTTCACATTCATTCTATAACTTGA 774 0.4057 MAFPNQSMSSESPQRKIGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGSVSEVNAQYFNQSFIISIIPNFGNNVSNYRQMMGEALSTMNAKDLKNLETKLEKGISRIRSKKNEMLFAEVEYMQKREIDLHNSNQLLRAKILERERSQHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNDNQYAGQDQMSLQFVSFSLARLHIHSIT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00841 257 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Pumo11g00841 257 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Pumo11g00841 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 202 - -
Pumo11g00841 257 Coils Coil 141 161 - -
Pumo11g00841 257 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Pumo11g00841 257 MobiDBLite consensus disorder prediction 1 20 - -
Pumo11g00841 257 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo11g00841 257 Pfam K-box region 124 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo11g00841 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo11g00841 257 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo11g00841 257 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo11g00841 257 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo11g00841 257 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo11g00841 257 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo11g00841 257 FunFam agamous-like MADS-box protein AGL11 29 111 - -
Pumo11g00841 257 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00841 Pumo-Chr11 30251102 30257169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00841 15 244 MADS-box Gene Family AT3G58780 60.417 1.69e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo11g00841 K-box 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00841 K09264 - gmx:100776263 375.17