Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00825 ATGGCGACGAGGGCAGCAGTGGCGGCGCCGCGCGTTTTGCGGCGGTTTTTCTGCACAAACTCGGCCTCTTCTTCTTTCCCCTTCGTTCCCACGCCGCCTCCGGGCGCCGTCCCCGCCCCAACCCGGCCCACGGCGGAGCCCAACCCCAACCTCTTCGTCTCTGGTCTTAGCAAACGTACTACTACAGAAAGGCTTCGGGAGGAATTTTCAAAATTTGGTGAAATTGTTCATGCGAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAGGGATTTGGTTTTGTGCAATATGCTACAATAGAAGAGGCAGCAAAGGGTATTGAAGGCATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCGAGACCAAGACCACCACCAGGACAACCTCTAAATAACAACAGTTCTCCGTATGGCCGGCAGTGA 438 0.5342 MATRAAVAAPRVLRRFFCTNSASSSFPFVPTPPPGAVPAPTRPTAEPNPNLFVSGLSKRTTTERLREEFSKFGEIVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPLNNNSSPYGRQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00825 145 MobiDBLite consensus disorder prediction 126 145 - -
Pumo11g00825 145 PANTHER NUCLEOLAR PROTEIN 8 32 139 - -
Pumo11g00825 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Pumo11g00825 145 Gene3D - 30 134 IPR012677 -
Pumo11g00825 145 FunFam RNA recognition motif-containing protein 28 140 - -
Pumo11g00825 145 MobiDBLite consensus disorder prediction 37 57 - -
Pumo11g00825 145 SMART rrm1_1 50 123 IPR000504 GO:0003723
Pumo11g00825 145 SUPERFAMILY RNA-binding domain, RBD 40 143 IPR035979 GO:0003676
Pumo11g00825 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00825 Pumo-Chr11 29541005 29543938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00825 50 126 Eukaryotic Initiation Factors Gene Family AT4G34110 36.364 3.30e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00825 - - gmx:100784609 243.047