Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00801 ATGATTATGGTTTCTTGCATACTTGTTTCCTCTCTCAAAATTTCCAAAGCAAATGATTCTATCAACTCGCTCCAATCTATGAGTGATGGGGAGAACTTGGTATCAAAAGGTGGAAAGTTTGAACTTGGGTTTTTCAGCCCAGGTAGTTCCCAGAAACGTTATCTGGGCATTTGGTACAAGAATGTCCCAATTCAGACAGTTGTTTGGGTTGCTAATAGGGCCAACCCCATCAATGATTCCTCAGCCATCTTAACACTCAACAGCACAGGCAATCTTGTTCTCACCCAAAATGAGTCTCTTGTTTGGTACACCAACAACTCTCACAAACAAGCACAGAATCCGGTGGCAGAGCTCTTGGACAGTGGCAATCTTGTGATAAGAAATGAAGGAGAAACAAACCCAGAAGCCTACTTGTGGCAAAGCTTTGACTTTCCATCTGATACACTCTTGCCAGAGATGAAGTTGGGACGGGACCTCAAAACTGGTCTGGAATGGAGATATACTGCTTGGAAGAGTCCAGATGATCCATCACCAGGAGATGTTTATTGGGCTTTAAAACTCTATAATTATCCTGAGTTTTATATGATGAAGGGAACAAAAAAGTTATTACGGCAGGGACCATGGAATGGCCTATATTTTAGTGGATTTCCAGATCTTCGGAATAACAGCATTTTTGGCTTCAATTTTGTCAGCAATAAGGATGAGATTTACTACACCTTTAGCCTCGCAAATAATTCTGTCCTCTCCATAAATGTAGTAAACCAAACAGGTAGAATTTATCGCTATGTATGGGCGGAGGGTGATCAAAATTGGAGGATATACATTTCACAACCAAAAGACTTTTGTGTCTCTTACGATATCTGTGGAGCCTATGGGAGTTGCATGATTTCAGAGACACAAGTGTGCCAATGTTTGAAAGGGTTTAGTCCAAAGTCACCACAAGCATGGGCTACATCTGACTGGAGTCAAGGCTGTGTCCGCAATAAACCGTTAAGTTGCAACAGTAAAGACAAAGATGGGTTTAACAAATTTGAAGGCCTCAAAGTTCCAGATACTACTCATACTTGGTTGGATGAGAGTATTGGTCTAGAGGAATGCAGAGTGAAGTGTTTGAATAATTGTTCTTGTATGACCTATACTAATTCAGACATAAGAGGTGGAGGTAGTGGTTGTGTCATGTGGTTTGGAGATCTCATTGACTTGAAACAGTTACAAACTGGTGGGCAAGACCTATATATCAGGATGCCTGCTTCAGAGTTGGATCCTGTATATAGGCACATGAAGAACACACCAACAATAGTTGCTTCCACCATTGCTGCAATTTGTGGGGTTCTTTTACTAAGTACTTATTTTATTTGCAAAATCCGGAGGAACAATGCTGGTAAAAATGAGGGAGAAACAAACCCAGAAGGGTACCTGTGGCAAAGCTTTGACTATCCATCTGATACACTCTTGCCAGGGATGAAGTTGGGTTCGGACCTCCGAACCGGTCTGGATCGGAGATATACTTCTTGGAAGAGTCCAGATGATCCATCCCCGGGAGACGTTTATAGGGTTTTAGCACTCCATAACTATCCTGAGGTTTATATGATGGAGGGAACAGAAAAGTTGTTCCGGTATGGACCTTGGAATGGCTTATATTTCAGTGGATTGCCAGATCTACAGAATAACAGCATTTTTGACTTGATTTTTATCAAGAATAAGGATGAGATTTACTACACCTACAGCCTCGTGAATAATTCTGTCATCACCAGAACTGTGACAAACCAAACAGGTACAATTAATCGTTATGTATGGGATGAGGATGGTAAAATATGGAGGTTATATAGATCCTACCCGAAAGAGTTTTGCGACAAGTATGGCCTCTGTGGACCCTACGGGAACTGCGTACGTACTCAAACACAATCCTGCCAATGTTTAAAAGGTTTCAGTCCAAAGTCACAGCAAGCTTGGGACTCAGCGGATTGGTCCCGAGGATGTGTCCGCAATAAACCATTAAGCTGCAAAGACAAACTCACAGATGGATTTGTCAAATACGTAGGGCTGAAAGTTCCAGATACTACGCATACATGGTTGGATGAGAGTATTGGTCTAGAGGAATGCAAAGTGAAGTGTTTGAATAATTGTTCTTGTATGGCCTATACTAATTCAGACGTAAGAGGTGGAGGTAGTGGTTGTGTCATGTGGTTTGGAGATCTCATCGACATGAAACAGATTGAAACTGGTGGGCAAGATCTATATATCAGGATGAATGCTTCGGAGGTAGAACCAGTAACAAGGCACAAGAAGAACACGATAACGATAATTGCTTCATCCATTGCTGCTTTTTGTGGGGTTCTTTTTCTAAGTACTTATTTTATTTGCAGAATCCGAAGGAACAGAATCCGAAGGAACAATGCTGAAGATAACAGTAAAAATGATGTGGATGATCTGGAGGTCCAATTGTTTGATCTACTGACAATTGCAACTGCCACTAATGATTTCTCCATAGAAAATAAGATCGGAGAAGGTGGTTTTGGACTTGTATATAAGGGAATATTAATCAACAGGCAAGAAATTGCTGTGAAGACTCTATCAAGGAGCACATGGCAAGGAGTGACAGAGTTCATAAATGAAGTAAAATTGATTGCAGAACTCCAACATCGGAATCTTGTAAAACTTCTTGGTTGTTGCATTCAAGGACAAGAAAGAATGCTAATTTATGAGTACATGCCAAACGGCAGCCTGGACTCCTTAATTTTTGATGATAAAAAAAGTAAATTGCTAGAGTGGCCTCAACGCTTCGACATAATTTGTGGAATTGCAAGGGGGCTTATGTATCTTCATCAAGATTCCCGGTTGACGATTATACATAGAGATCTCAAAGCAAGTAACATCCTACTCGATGAAAAATTGAGACCAAAAATATCAGATTTTGGAGTGGCCAGAACTTTTGGAGGAGACCAATCTGAAGGAAACACAAGTAGAGTAGTAGGGACCTATGGGTATATGGCACCGGAGTATGCTGTTGATGGTTCATTTTCTGTAAAATCTGATGTCTTTAGCTTTGGCATTTTAGCGTTGGAGACTGTATGTGGGAAGAGAAACAGAGGACTTTATCAAACAGATCAGAGTCTTAACCTCGTTGGTCATGCATGGACATTATGGAAAGCGGGCAGGGCATTAGATTTGATTGACTCAAACATGAAGTTGTCGTCGTGCGTTATATCAGAAGTACTACGTTGCGTGCATGTTAGTCTTTTGTGTGTGCAGCAGTACCCAGAAGATAGGCTTCCAATGAAGTCCGTGATTCTAATGCTGGAGGGTCACATGGAATTGGTTGAGCCTAAAGAACATGGTTTCATTTCTAGAAATGTTTTAGGTGAAGTAGATTTACGCTCGAATCAGAACGACACAAGTTCAACCAACTATGTGACAATTACCATGTTAGAAGGTCGATGA 3441 0.4103 MIMVSCILVSSLKISKANDSINSLQSMSDGENLVSKGGKFELGFFSPGSSQKRYLGIWYKNVPIQTVVWVANRANPINDSSAILTLNSTGNLVLTQNESLVWYTNNSHKQAQNPVAELLDSGNLVIRNEGETNPEAYLWQSFDFPSDTLLPEMKLGRDLKTGLEWRYTAWKSPDDPSPGDVYWALKLYNYPEFYMMKGTKKLLRQGPWNGLYFSGFPDLRNNSIFGFNFVSNKDEIYYTFSLANNSVLSINVVNQTGRIYRYVWAEGDQNWRIYISQPKDFCVSYDICGAYGSCMISETQVCQCLKGFSPKSPQAWATSDWSQGCVRNKPLSCNSKDKDGFNKFEGLKVPDTTHTWLDESIGLEECRVKCLNNCSCMTYTNSDIRGGGSGCVMWFGDLIDLKQLQTGGQDLYIRMPASELDPVYRHMKNTPTIVASTIAAICGVLLLSTYFICKIRRNNAGKNEGETNPEGYLWQSFDYPSDTLLPGMKLGSDLRTGLDRRYTSWKSPDDPSPGDVYRVLALHNYPEVYMMEGTEKLFRYGPWNGLYFSGLPDLQNNSIFDLIFIKNKDEIYYTYSLVNNSVITRTVTNQTGTINRYVWDEDGKIWRLYRSYPKEFCDKYGLCGPYGNCVRTQTQSCQCLKGFSPKSQQAWDSADWSRGCVRNKPLSCKDKLTDGFVKYVGLKVPDTTHTWLDESIGLEECKVKCLNNCSCMAYTNSDVRGGGSGCVMWFGDLIDMKQIETGGQDLYIRMNASEVEPVTRHKKNTITIIASSIAAFCGVLFLSTYFICRIRRNRIRRNNAEDNSKNDVDDLEVQLFDLLTIATATNDFSIENKIGEGGFGLVYKGILINRQEIAVKTLSRSTWQGVTEFINEVKLIAELQHRNLVKLLGCCIQGQERMLIYEYMPNGSLDSLIFDDKKSKLLEWPQRFDIICGIARGLMYLHQDSRLTIIHRDLKASNILLDEKLRPKISDFGVARTFGGDQSEGNTSRVVGTYGYMAPEYAVDGSFSVKSDVFSFGILALETVCGKRNRGLYQTDQSLNLVGHAWTLWKAGRALDLIDSNMKLSSCVISEVLRCVHVSLLCVQQYPEDRLPMKSVILMLEGHMELVEPKEHGFISRNVLGEVDLRSNQNDTSSTNYVTITMLEGR 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00801 1146 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 142 - -
Pumo11g00801 1146 Pfam Protein tyrosine and serine/threonine kinase 829 1029 IPR001245 GO:0004672|GO:0006468
Pumo11g00801 1146 Gene3D Transferase(Phosphotransferase) domain 1 904 1114 - -
Pumo11g00801 1146 CDD B_lectin 25 145 IPR001480 -
Pumo11g00801 1146 SMART blect_4 24 145 IPR001480 -
Pumo11g00801 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 949 961 IPR008271 GO:0004672|GO:0006468
Pumo11g00801 1146 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 176 IPR036426 -
Pumo11g00801 1146 Gene3D - 12 142 IPR036426 -
Pumo11g00801 1146 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 904 1108 - -
Pumo11g00801 1146 SMART serkin_6 828 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00801 1146 Pfam S-locus glycoprotein domain 538 647 IPR000858 GO:0048544
Pumo11g00801 1146 Pfam S-locus glycoprotein domain 204 312 IPR000858 GO:0048544
Pumo11g00801 1146 ProSiteProfiles PAN/Apple domain profile. 333 417 IPR003609 -
Pumo11g00801 1146 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 792 903 - -
Pumo11g00801 1146 CDD PAN_AP_plant 665 749 - -
Pumo11g00801 1146 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 466 1088 - -
Pumo11g00801 1146 SUPERFAMILY alpha-D-mannose-specific plant lectins 470 511 IPR036426 -
Pumo11g00801 1146 ProSiteProfiles Protein kinase domain profile. 828 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00801 1146 SMART ntp_6 671 750 IPR003609 -
Pumo11g00801 1146 SMART ntp_6 336 415 IPR003609 -
Pumo11g00801 1146 ProSitePatterns Protein kinases ATP-binding region signature. 834 856 IPR017441 GO:0005524
Pumo11g00801 1146 CDD PAN_AP_plant 330 416 - -
Pumo11g00801 1146 ProSiteProfiles Bulb-type lectin domain profile. 18 139 IPR001480 -
Pumo11g00801 1146 ProSiteProfiles PAN/Apple domain profile. 668 752 IPR003609 -
Pumo11g00801 1146 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 667 750 - -
Pumo11g00801 1146 SUPERFAMILY Protein kinase-like (PK-like) 810 1101 IPR011009 -
Pumo11g00801 1146 Gene3D Hepatocyte Growth Factor 668 749 - -
Pumo11g00801 1146 Gene3D Hepatocyte Growth Factor 332 413 - -
Pumo11g00801 1146 Gene3D Phosphorylase Kinase; domain 1 801 903 - -
Pumo11g00801 1146 Pfam D-mannose binding lectin 66 171 IPR001480 -
Pumo11g00801 1146 Pfam D-mannose binding lectin 466 506 IPR001480 -
Pumo11g00801 1146 Pfam PAN-like domain 333 401 IPR003609 -
Pumo11g00801 1146 Pfam PAN-like domain 670 736 IPR003609 -
Pumo11g00801 1146 FunFam Os04g0303100 protein 57 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00801 Pumo-Chr11 28147469 28178912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00801 766 1114 Receptor kinase-like Gene Family AT4G23230 52.571 9.93e-115 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo11g00801 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00801 - - gmx:100802443 1142.1