Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00799 ATGGATCTTCTGTGCAACGCTTATTCGAATGCCTCAGACGATGACGACGACGACGACGAAGAACAACCAAAACGACAGAGAGTATCATCACTCTCTTCCTCTAACCCGCCAAAACGACACCTTCCTTTACCTTCTCCTTCGTTCGACCATCAAACGCAAGAAGCTCCCATGCCCGGAAGATACATTTCGAAACGACAACGCGCATTGATGGGTCCCACCCCTGCCCCTCTTCCTGACCCCGTTCCTGTTCCGTCTCCGTTCACGCTATCTGGGAGTTTCTCGGATGCTGATATACACCATAGTATTTTATCATTGTTGAAAAGTAAAGCAAAGGGTCATCAAAGCCCAAACCTGATATCTGAAAAGCTATCTGCGACTCTATATGGGCATACAAAAGTTGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGATCATACGGTTTGCATATGGAATGTATGGAGCAGAAAGCAGAAGAAAGCATGTGTGCTAAACTTCCACAATGCAGCAGTCAAAGATGTGAAATGGTCTCAGCAAGGGCACTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTGATCGATGTTGAAAAGGGATTGGAGACTCAAGTTTTCAGAGAAGATCAAATTGTTGGAGTTATAAAGTTCCATCCAGACAATACAAATCTCTTCCTTTCTGGAGGGTCAAAGGGCCATATCAAACTATGGGATGTCAGAAATGGCAAAGTAGTGCATAATTATAATCGAAATTTAGGTCCGGTTCTGGATGTTGAGTTCACAATGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTCAGAGTAATGTCAGTGAGAACGCTATTATTGTTTGGGATGTGTCAAGAGAGGTACCATTATCTAATCAGGTTTATGTGGAAGCTTATACATGTCCCTGCGTGAGGCGCCACCCATTTGATTCAATTTTTGTTGCCCAATCAAATGGGAACTATGTTGCAATCTTTACTACCACCCCACCTTACAGACTCAACAAATATAAGCGATATGAGGGCCACGTGGTCTCTGGCTTCCCAATCAAGTGCAATTTCAGCTTGGATGGTAAAAAACTCGCTTCTGGCTCTTCAGATGGTTCTATCTACCTTTATGATTATCAGTCATCCAAAGTTGTGAAGAAAATCAAGGCCCATGACCAAGCATGCATAGATGTTGCCTTCCACCCTGTTATACCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTATTTTGGTATTTGAGTAG 1287 0.4297 MDLLCNAYSNASDDDDDDDEEQPKRQRVSSLSSSNPPKRHLPLPSPSFDHQTQEAPMPGRYISKRQRALMGPTPAPLPDPVPVPSPFTLSGSFSDADIHHSILSLLKSKAKGHQSPNLISEKLSATLYGHTKVVNAIHWSSTHAHLLASAGMDHTVCIWNVWSRKQKKACVLNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLIDVEKGLETQVFREDQIVGVIKFHPDNTNLFLSGGSKGHIKLWDVRNGKVVHNYNRNLGPVLDVEFTMNGKQFISSSDVSQSNVSENAIIVWDVSREVPLSNQVYVEAYTCPCVRRHPFDSIFVAQSNGNYVAIFTTTPPYRLNKYKRYEGHVVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVVKKIKAHDQACIDVAFHPVIPNVIASCSWDGSILVFE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00799 428 ProSitePatterns Trp-Asp (WD) repeats signature. 147 161 IPR019775 -
Pumo11g00799 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 255 IPR001680 GO:0005515
Pumo11g00799 428 Gene3D - 104 428 IPR015943 GO:0005515
Pumo11g00799 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 169 IPR001680 GO:0005515
Pumo11g00799 428 SMART WD40_4 249 295 IPR001680 GO:0005515
Pumo11g00799 428 SMART WD40_4 207 246 IPR001680 GO:0005515
Pumo11g00799 428 SMART WD40_4 165 204 IPR001680 GO:0005515
Pumo11g00799 428 SMART WD40_4 120 160 IPR001680 GO:0005515
Pumo11g00799 428 SMART WD40_4 388 428 IPR001680 GO:0005515
Pumo11g00799 428 SMART WD40_4 344 385 IPR001680 GO:0005515
Pumo11g00799 428 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Pumo11g00799 428 Pfam WD domain, G-beta repeat 122 160 IPR001680 GO:0005515
Pumo11g00799 428 Pfam WD domain, G-beta repeat 171 203 IPR001680 GO:0005515
Pumo11g00799 428 Pfam WD domain, G-beta repeat 223 246 IPR001680 GO:0005515
Pumo11g00799 428 CDD WD40 117 428 - -
Pumo11g00799 428 MobiDBLite consensus disorder prediction 1 55 - -
Pumo11g00799 428 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 428 - -
Pumo11g00799 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 161 - -
Pumo11g00799 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 394 IPR001680 GO:0005515
Pumo11g00799 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Pumo11g00799 428 SUPERFAMILY WD40 repeat-like 118 427 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00799 120 298 U-box Gene Family AT2G33340 26.776 3.58e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00799 K24742 - gmx:100790592 781.941