Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00796 ATGGTTTTGCAGAATATATCTGAAGTTAGGGACTCGGGTGGTGTGGTGAAGAAAAGTGGGAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAAGTGACTGTTTTAAGCACCCCGTATATGAAAAGTGGCGCTCCCATACAGCATCAGCAGAGTTCTGGAAAATCCAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCCACAGTTGAGTATTGGACACCAACATTTGGAGGAACTTACAGATAG 453 0.4636 MVLQNISEVRDSGGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00796 150 MobiDBLite consensus disorder prediction 94 118 - -
Pumo11g00796 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 97 IPR036638 GO:0046983
Pumo11g00796 150 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 79 IPR011598 GO:0046983
Pumo11g00796 150 MobiDBLite consensus disorder prediction 1 39 - -
Pumo11g00796 150 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 131 - -
Pumo11g00796 150 FunFam Transcription factor bHLH123 family 40 102 - -
Pumo11g00796 150 CDD bHLH_AtbHLH_like 36 87 IPR045239 -
Pumo11g00796 150 Gene3D - 40 104 IPR036638 GO:0046983
Pumo11g00796 150 SMART finulus 41 85 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00796 Pumo-Chr11 27896981 27898536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00796 4 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 69.333 1.01e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00796 - - gmx:100818424 282.337