Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00734 ATGAACGAGAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAACACAAAAAGATACTGGAAGGACTTCTTAAACTACCAGAGAATAAGGAATGTGCTGACTGTAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTTCGAGAAGAGAAAAGTCCTTCACATTGGCAAAAGCCTGTGGAAAGAGGTGGGCATAGTTATGCAGCCATGTCTGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCAAAAGGACCTGAGCTGGTAACTCCTGTGGCAAAACCTCAGCATGTTGAGAAAGCAGAACCTGTTGCACCACCACCACAATCTCAAACTTCAAAACAGACTACTGACACAACACAAAATTCCCCTCCAAAAGTTGACTATGCTACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCAGGGGCAGCTGATCCTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATCGACAGCAGAGAAGACTGATGCTGCGAAAGCAGTTGAGAGTACACCCCAGTCCACACCCCAGTCTACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTCAACTCCAGAAAAACCACAAAAAGATTTAAAAAATGATATCATGAGCCTCTTTGAGAAGTCCAACAATATTGTGTCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTAGCACAGCAACAGTCTCTTCTAGTGGCTGCCGCTAAATCTGCTGGTGGGGATCCCAAGTACCTGGCCAGCTTACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAATAAATCTGGTAGTGGGGATTCCAAGTACCCAGCGGGCATACAGCAACCTGGGTCCAATATTCCTGTCCAAAGTTGGCCAGCTGCTGGCTACCCAATGCCAGGTGCAATGCCCATGGGTGGTCAGGAAGAGTTACAGAAACTCATGCAGACAATGAACATGAATGCAGCGCATTCAGCAGGGAGTTCAGTTCAGTATCCACCATCTAGTTATTATGCTATGGGACAAGTTGCTCCCACTAATGGTACGACGCCATCGGGAGCAAGCAAACCTCAGTCAGCATCTCCTGTATCATCATCGACCACTTCAAAGACAGGGAGCGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCAAAACACTGA 1521 0.4484 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKSPSHWQKPVERGGHSYAAMSENTFEERKKIQPSNAIPATRISVPAPPKGPELVTPVAKPQHVEKAEPVAPPPQSQTSKQTTDTTQNSPPKVDYATDLFDMLSMDDPNEKGSGAADPTADDNNWAGFQSAAEASTAEKTDAAKAVESTPQSTPQSTSGIEDLFKDSPSVTPSSTPEKPQKDLKNDIMSLFEKSNNIVSPFAMHQQQLAMLAQQQSLLVAAAKSAGGDPKYLASLQQQSLLMAAAAANKSGSGDSKYPAGIQQPGSNIPVQSWPAAGYPMPGAMPMGGQEELQKLMQTMNMNAAHSAGSSVQYPPSSYYAMGQVAPTNGTTPSGASKPQSASPVSSSTTSKTGSDYDFSSLTQGMFAKH 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00734 506 CDD ArfGap 19 117 - -
Pumo11g00734 506 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Pumo11g00734 506 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Pumo11g00734 506 MobiDBLite consensus disorder prediction 209 230 - -
Pumo11g00734 506 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Pumo11g00734 506 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pumo11g00734 506 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pumo11g00734 506 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Pumo11g00734 506 MobiDBLite consensus disorder prediction 125 146 - -
Pumo11g00734 506 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 371 IPR044520 GO:0005096
Pumo11g00734 506 MobiDBLite consensus disorder prediction 456 506 - -
Pumo11g00734 506 MobiDBLite consensus disorder prediction 164 319 - -
Pumo11g00734 506 MobiDBLite consensus disorder prediction 125 150 - -
Pumo11g00734 506 MobiDBLite consensus disorder prediction 456 498 - -
Pumo11g00734 506 MobiDBLite consensus disorder prediction 282 315 - -
Pumo11g00734 506 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Pumo11g00734 506 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Pumo11g00734 506 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00734 Pumo-Chr11 25041030 25047315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00734 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 1.66e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00734 K12486 - gmx:100807561 835.484