Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00716 ATGGCTGAGCAGGAAATGATCAGTGCTGTAGCTTCTTCCCTGAACTCTTGTTCTATGGTCTCTTCTAAAAAATATGACGTTTTCCTAAGCTTTCGAGGTGAGGACACCCGCATGAACTTCACAAGCCATCTTTATGGAGCTTTGAAGCAAAAGAGAGTTGAAGCCTACATAGACAACTGGCTTGGAAAAGGAGATGAAATCTCACCAGCACTCATGAAAGCTATTGAAGATTCGCATGTATCCGTTGTCATCTTCTCAAAGAACTATGCTTCCTCAACATGGTGCTTGGCTGAACTCAGCAAGATTCTGGAATGCAGGAAAGACCAAGGACAAATTGTGATACCTGTATTCTACAGAATAGATCCATCTGATGTGAGGAAGCAGACTGGGAGCTACAAGCAAGCCTTTGCAAAACATGAGGGAGAACCCAGGTGCAACAAATGGAAAACTGCTCTCACTGAAGTAGCCAATATACCTGGGTGGTGCTCACTGACTTATAGGACTGAATCTGAATTCCTTAATGTCATTGTTGGAGATGTTTTGCGAAGATTGACTGCTAGATACCCAAACCAACTTCAAGGACTGGTTGGAAATGAGGAAAATTATGAACACATTGAATCATTACTAAATATTGGGTCAAGTGAAGTTAGATTCCTTGGAATATGGGGCATGGGTGGCATAGGTAAGACTACCCTTGCTACTGCTTTATATGAGAAACTGTCTCATCAGTATGAAGGTAATTGCTTCCTCGCAGATGTAAGGGAAGAATCAAAGAAGCATGGACTCAAAGCTTTACGCAATAAACTTTTTTCTGTGTTGTTAGAGAACGGAAATAATTGTTTTGATGCACCCTTTGTGGTATCTGATTCTAACATAAGTAGGGTTCAGCATAAAAAATGTTTCATTGTCCTCGATGATGTGGATACCTCATCGCAATTGAAAAAACTATTAAAATATGATTTCTTGGCACCAGGAAGTAGAGTCATTGTGACAACCAGAGATAAGCATGTACTTGTATCTGGCCAAGCTGATGAAATATATCAGGTCGAGGGATTGAGCTCTCATCACTCTCTTCAACTTTTTTGTTTGACTGCTTTTGGAGAAAATCAACCTAAAGATGGATATGAATATCTATCAAATAGAGTGCTTTCCTATTGCAAAGGCATTCCATTGGCTTTAAAAGTTCTGGGTTCTAGTCTTCATTCAAGAAGCAAAGAATCATGGGAAAGTGAATTGAGAAAACTCCAAAAGATTCCAAATATGAAAATTCATAATATATTAAAATTAAGTTATGATGGCTTACAATCTTCTGAAAAGGAAATATTTTTAGACATTGCATGCTTCTTCCGAGGATGGGATAGAGGTCGGGTAACAAGTCTATTGGACGCATGTGATTTCTCTCCCGAACTTGGGATAAAAGTTCTTTTAGATAAAACTCTTATAACAATTTCAGATGCCAATCAGATAGAAATGCATGACTTGATTCAAGAAATGGGTTGGGAGATTGTTCGTCAAGAATCTATGAAAGACCCCGGAAGACGAAGTCGATTGTGGAGACCCGAAGAAGTGCTTGATGTATTGAAATATAACAAGGGAACTGATGTTGTTGAAGGTATAATTTTAGATTTGTCTAAATTAACTGGAGATCTATATTTAAGCTCCAATTCCCTTGCAAAGATGACTTGCGGGAGATTTCTTCAAATCCATGGTTGGTATGGGATTAACAGATTTAATTTGTACCTTTCAAATGGTCTTCAGTCATTGTCTGATAAATTGAGGTACCTTCAATGGGATGGATTCTGTCTTGAGTCTTTGCCATCTAACTTTTGTGCTGAACAGCTTGTAGAGCTTCGCATGACTCATAGCAAACTTAAAAAGCTTTGGGACGGGGTTCAGAATCTTGTAAATTTAAAGACAATTGACCTTTCGTACTCTCAATATCTGATTGAGATCCCAGATTTATCTAAGGCAGAAAAACTTGAAAGTGTTTCTCTTAGTTGGTGTGAAAGCTTGAGTCAGCTTCATGTTCATGTAAAATCTCTCCATGTACTGAACCTCAATGGTTGTTCATCTATCAAGGAATTCTCAATTACATCAGAGGAAATGACAGAATTGGACTTATCAGACACTGCTATATGTGCATTGCCGTCATCAATTGGTCACTTATCGTCTTTAAAAGAGTTACACCTTAGTGGGACTAATGTTGAGAGCTTGCCTGCAAACATAAAAAACCTTTCAATGCTGACAAGGCTTTGGTTAGATGATTGCAGGAAACTCTTATCTCTGCCAGAGCTGCCACCATCCTTGAGAGTGTTTGAGTTAAAAGATTGCAGGAAACTCGTGTCTCTGCCAGAGCTTCCACCATCCTTGGAAAAGGTGAGTGCCTATAACTGCATTTCTCTGAAAACAGACATCACTCAACAGCTAGTGTTACAACACATGTTACAGAGCCACATACCCTACATACACAAACATGACGATGGCAATTATGATGATGAGGATCCTGAGTATTTTTACACCAGGTATTTCATGTTCCCGGGAGACCATCTCACTGACAAGTGTTGGTTTCGCACAGCAGAGAGTTCAATCACTATTCCTTATCTTCCAAAATCTAACTTGTTTGGTTTCATTTATTGCATCATTATTTCCAAGAGATCATCCTTAGATGTTTTTTCCTGTTGTATCTATCATGATGGCATATCGGTTGGACGTGACGGGAAGGATATGCGTGACCGAAAATTAATTTCGGATCACGTGGTATTTTGGTATCATGACATCAGCAAATTTGATGGAATAAGTGAAGTGTGTGATCATTTCAGCAACATAACATTTATATTTGAATCTGAACAGTATTATGGCAACAAGGTTACACATGATAAAGAGAGGATAAAAGGGTGTGGGGTCTTCCCAGTATATGCCTCGGAATCAGGGTTGAATATGTTTGGTAGTAGTAGCAAGGAAATTTTTGAATTGGAATCCATTACTCAAATCTCTGATATGAGTCACGGCCAAGAGCAATTGAAGTTGGAAGCCCTGAAAATGAAAATGAAGATGACCGGGAACAACTTCAGAGGGGAATCTTACCATAAATGA 3093 0.3889 MAEQEMISAVASSLNSCSMVSSKKYDVFLSFRGEDTRMNFTSHLYGALKQKRVEAYIDNWLGKGDEISPALMKAIEDSHVSVVIFSKNYASSTWCLAELSKILECRKDQGQIVIPVFYRIDPSDVRKQTGSYKQAFAKHEGEPRCNKWKTALTEVANIPGWCSLTYRTESEFLNVIVGDVLRRLTARYPNQLQGLVGNEENYEHIESLLNIGSSEVRFLGIWGMGGIGKTTLATALYEKLSHQYEGNCFLADVREESKKHGLKALRNKLFSVLLENGNNCFDAPFVVSDSNISRVQHKKCFIVLDDVDTSSQLKKLLKYDFLAPGSRVIVTTRDKHVLVSGQADEIYQVEGLSSHHSLQLFCLTAFGENQPKDGYEYLSNRVLSYCKGIPLALKVLGSSLHSRSKESWESELRKLQKIPNMKIHNILKLSYDGLQSSEKEIFLDIACFFRGWDRGRVTSLLDACDFSPELGIKVLLDKTLITISDANQIEMHDLIQEMGWEIVRQESMKDPGRRSRLWRPEEVLDVLKYNKGTDVVEGIILDLSKLTGDLYLSSNSLAKMTCGRFLQIHGWYGINRFNLYLSNGLQSLSDKLRYLQWDGFCLESLPSNFCAEQLVELRMTHSKLKKLWDGVQNLVNLKTIDLSYSQYLIEIPDLSKAEKLESVSLSWCESLSQLHVHVKSLHVLNLNGCSSIKEFSITSEEMTELDLSDTAICALPSSIGHLSSLKELHLSGTNVESLPANIKNLSMLTRLWLDDCRKLLSLPELPPSLRVFELKDCRKLVSLPELPPSLEKVSAYNCISLKTDITQQLVLQHMLQSHIPYIHKHDDGNYDDEDPEYFYTRYFMFPGDHLTDKCWFRTAESSITIPYLPKSNLFGFIYCIIISKRSSLDVFSCCIYHDGISVGRDGKDMRDRKLISDHVVFWYHDISKFDGISEVCDHFSNITFIFESEQYYGNKVTHDKERIKGCGVFPVYASESGLNMFGSSSKEIFELESITQISDMSHGQEQLKLEALKMKMKMTGNNFRGESYHK 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00716 1030 Gene3D - 21 185 IPR035897 -
Pumo11g00716 1030 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Pumo11g00716 1030 Gene3D - 351 435 IPR042197 -
Pumo11g00716 1030 PRINTS Disease resistance protein signature 294 308 - -
Pumo11g00716 1030 PRINTS Disease resistance protein signature 386 400 - -
Pumo11g00716 1030 PRINTS Disease resistance protein signature 218 233 - -
Pumo11g00716 1030 PRINTS Disease resistance protein signature 632 648 - -
Pumo11g00716 1030 FunFam Disease resistance protein (TIR-NBS-LRR class) 353 435 - -
Pumo11g00716 1030 SMART till_3 24 158 IPR000157 GO:0007165
Pumo11g00716 1030 Gene3D Ribonuclease Inhibitor 522 678 IPR032675 -
Pumo11g00716 1030 ProSiteProfiles TIR domain profile. 23 184 IPR000157 GO:0007165
Pumo11g00716 1030 SUPERFAMILY L domain-like 550 817 - -
Pumo11g00716 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 445 IPR027417 -
Pumo11g00716 1030 Gene3D - 186 346 IPR027417 -
Pumo11g00716 1030 Pfam NB-ARC domain 205 431 IPR002182 GO:0043531
Pumo11g00716 1030 Gene3D Ribonuclease Inhibitor 679 818 IPR032675 -
Pumo11g00716 1030 Pfam Leucine Rich Repeat 613 632 IPR011713 -
Pumo11g00716 1030 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 161 IPR035897 -
Pumo11g00716 1030 Pfam TIR domain 24 190 IPR000157 GO:0007165
Pumo11g00716 1030 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 186 - -
Pumo11g00716 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 787 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00716 Pumo-Chr11 24752979 24757334 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00716 21 827 WRKY Transcription Factor Family AT4G12020 33.333 2.28e-109 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00716 - - gmx:100793798 1244.95