Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00709 ATGGAAAGCACCGAAGACTCATCCACGAGTTCACAACAACAACCGCACCTGCCACCCGGGTTTCGGTTCCACCCCACGGACGAGGAGCTCGTGGTTCATTACCTCAAGAAGAAGGTTGATTCTGTTCCTCTCCCTGTTTCAATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGTCATCGTTTGGGGAGGAAGAGTGGTACTTCTTCAGCCCAAGAGATAGGAAGTACCCAAATGGCGCAAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAGGCCACGGGGACAGATAAGCCTATATGTAGTGGAACTCAAAAGGTTGGGGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAGCCACCAAAAGGGGTCAAAACCGATTGGATCATGCATGAGTACCGTGTTGCTGAAACCAAGCCTAACAATAAGCCTCCTGGGTATGACTTGGGCCACAAGAAAAACTCCCTAAGGTTGGATGATTGGGTGTTGTGCCGAATCTACAAGAAGGGCAACACACAAAAGTCACCAATGGAGCATGAGAGGGATGATTCCATGGATGACATGATTGGAGAAGTAGTACCTCCTTCCATCAACGTGGGCCACCACATGAGTGCGAGATTTCACCTTTCAAAGATGTCCACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGGGTGGTTATAGGTGGCAATGGTACTATGAATGGGATCACCACTAATAATCACTTTGGCACCTCAAACTCCTCCAAGCCAGAGCTTCCTTTTGCCCCTTCAAACCACAACAACACTTCTTCTTCATCAGCCTCCAAGAGAACACTCTCATCACTGTATTGGAATGTTGATGATATTAATGATGACCACAAACAGTTCAACTTGGACAGTAATGGGAATGTGAGTGTTGTGAGGACTGAAGAGAATAATAATAATAATAATGGTACTTCTGGCTCATTTGCTACTCTGCTTAACCAGCTTCCACAAACACCTTCATTGCCCCAAATAGGGTCTTTAGGAGATGGGTTACTTCGGACACCATATCAAATACAAGGGACCAATTGGTATGGTTAA 1101 0.4578 MESTEDSSTSSQQQPHLPPGFRFHPTDEELVVHYLKKKVDSVPLPVSIIADVDLYKFDPWELPAKSSFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRVAETKPNNKPPGYDLGHKKNSLRLDDWVLCRIYKKGNTQKSPMEHERDDSMDDMIGEVVPPSINVGHHMSARFHLSKMSTSYSGALLENDRNTLEGVVIGGNGTMNGITTNNHFGTSNSSKPELPFAPSNHNNTSSSSASKRTLSSLYWNVDDINDDHKQFNLDSNGNVSVVRTEENNNNNNGTSGSFATLLNQLPQTPSLPQIGSLGDGLLRTPYQIQGTNWYG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00709 366 PANTHER NAC TRANSCRIPTION FACTOR 56 17 230 - -
Pumo11g00709 366 FunFam NAC transcription factor 56 26 181 - -
Pumo11g00709 366 MobiDBLite consensus disorder prediction 1 17 - -
Pumo11g00709 366 MobiDBLite consensus disorder prediction 1 22 - -
Pumo11g00709 366 SUPERFAMILY NAC domain 8 176 IPR036093 GO:0003677|GO:0006355
Pumo11g00709 366 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Pumo11g00709 366 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Pumo11g00709 366 Gene3D NAC domain 26 181 IPR036093 GO:0003677|GO:0006355
Pumo11g00709 366 MobiDBLite consensus disorder prediction 251 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00709 Pumo-Chr11 24517099 24519791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00709 1 365 NAC Transcription Factor Family AT3G15510 51.436 9.77e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g00709 NAM 2.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00709 - - gmx:100812933 596.275