Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00708 ATGGGAATTCCTGAGAGAGACCCTCTTGCACAATTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAGGAGCTTTTGGTTCAGTACCTTTGCCGTAAGGTTGCTGGGTACCATTTCTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGGTAAGGCTGTGTTTGGAGAGAAGGAGTGGTACTTCTTCAGCCCCAGAGACAGGAAGTATCCTAATGGTTCGCGACCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACTGGAACTGACAAAGTCATAACCACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGCAAAGCACCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGCCTTCTCGACTCTACGCGCAAACACAACCTCGGAAGCGCAAAGCTTGATGATTGGGTTCTGTGTCGTATCTATAAGAAGAACTCAAGTGCGCAAAAGGTTGAGACAAATTTTTTGGCTATGGAATGCAGCAATGGGTCATCACCTTCTTCATCGTCCCACGTGGACGACATGCTTGAATCATTGCCAGATATCAACGACCAGTGCTTCACCCTGCCGCGGGTGAACTCAGTCAGAACGATGCAACAGCTGGACGAGAAATTCGGGTTTCACAACATGGGATCCGGGTTTTTCGCGGATTGGGTTAACCCGACGAATCTCGATTCGGTTTCCGAATTCGGGTCGGGTTGCCAAACCCAAGAGATAGTGAATTATGATTGCAATGACTTATTTGTCCCTTCCGTGCCGCCCTTCGGCCACCACGTGGACTTCATGGTGGGGGCGCCGTCCGAGGAGGAGGTTCAGAGCGGCGTGAGGACCCAACCGGCCAATGGGGCCGGGTGTTTTCAGCAGAATCCGAATGCCCGATTGTCACCGGGCTCGGGCGACCCATTTGGGTTTGGGTTCCTGGGTCAGCAAATCGGGTTCGGGTTACGGGACTGA 1014 0.5039 MGIPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLPIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLLDSTRKHNLGSAKLDDWVLCRIYKKNSSAQKVETNFLAMECSNGSSPSSSSHVDDMLESLPDINDQCFTLPRVNSVRTMQQLDEKFGFHNMGSGFFADWVNPTNLDSVSEFGSGCQTQEIVNYDCNDLFVPSVPPFGHHVDFMVGAPSEEEVQSGVRTQPANGAGCFQQNPNARLSPGSGDPFGFGFLGQQIGFGLRD 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00708 337 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Pumo11g00708 337 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 203 - -
Pumo11g00708 337 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pumo11g00708 337 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Pumo11g00708 337 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Pumo11g00708 337 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00708 Pumo-Chr11 24482790 24484953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00708 1 218 NAC Transcription Factor Family AT4G27410 69.456 8.79e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g00708 NAM 2.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00708 - - gmx:100811301 619.772