Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00693 ATGTCCTTGCCTGCTTTCTTTCGCATTGCACGACAAGGCAATGAAGGCATTGTTCCTGTCCTTTATAGAAGGGTGGCATGCAAGAGAAGAGGGGGAGTGAGGTTCACATTGAAGGGGCAGTCCAACTTCAACATGGTGATGATATCCAATGTTGGAGGGAGTGGGGATGTGAAGGCTGTGTGGATCAGAGGATCCAGAAGTGGGGCATGGCTGCCAATGCACAGGAACTGGGGGGCCAACTGGCAGAGCAGTGCAGATCTCAGAAGCCAAAGACTCTCATTCAAGATGACACTGGTTGATGGGAAGACACTGGTGTTCCTCAATGTGGTGCCTTCCACTTGGAGGTTTGGACAGACATTTTCATCCAGGAGTCAGTTCTTTTAG 384 0.5026 MSLPAFFRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMISNVGGSGDVKAVWIRGSRSGAWLPMHRNWGANWQSSADLRSQRLSFKMTLVDGKTLVFLNVVPSTWRFGQTFSSRSQFF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00693 127 PRINTS Expansin/Lol pI family signature 70 84 IPR007118 GO:0005576
Pumo11g00693 127 PRINTS Expansin/Lol pI family signature 108 122 IPR007118 GO:0005576
Pumo11g00693 127 PRINTS Expansin/Lol pI family signature 15 31 IPR007118 GO:0005576
Pumo11g00693 127 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 42 122 IPR007117 -
Pumo11g00693 127 Pfam Expansin C-terminal domain 33 111 IPR007117 -
Pumo11g00693 127 Gene3D - 32 127 IPR036749 -
Pumo11g00693 127 PRINTS Expansin signature 79 100 IPR002963 GO:0009664
Pumo11g00693 127 PRINTS Expansin signature 43 64 IPR002963 GO:0009664
Pumo11g00693 127 PRINTS Expansin signature 31 43 IPR002963 GO:0009664
Pumo11g00693 127 PRINTS Expansin signature 7 20 IPR002963 GO:0009664
Pumo11g00693 127 PRINTS Expansin signature 108 124 IPR002963 GO:0009664
Pumo11g00693 127 PANTHER EXPANSIN-A15 1 125 IPR002963 GO:0009664
Pumo11g00693 127 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 32 IPR007112 -
Pumo11g00693 127 SUPERFAMILY PHL pollen allergen 29 122 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00693 Pumo-Chr11 24228262 24230232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00693 1 127 Expansin Gene Family AT3G15370 75.591 1.31e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00693 - - gmx:106795376 257.684