Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00684 ATGGAATCTAAATACTTTGACTCCAATGGGGAAGTCTCACTAAAGCAAAAATCAAAATCCATTTCAGCAGAGCCAACAATCTCTACTAGTGAAAATGATTGCTTTGATTGCAACATTTGCTTGGAATCAGCACATGACCCTGTGGTCACTCTCTGTGGCCACCTTTACTGCTGGCCATGCATATACAAGTGGCTTGATGTCCGAAGCTCCTCTGTCGAACCAGACCAGCAGCAGACATGCCCAGTTTGTAAATCTGAGATCTCTCACACTTCAGTAGTCCCCCTCTATGGCCGCGGAACTTCGAATTCAGAATCCAAAGCTAAGAAACTCCAGATGAGTATTGGAATACCTCACAGGCCACCTCCTTACAACTTGAATGCTGTGTTAACTTCTGCTCGCGCACCGATTCCGCATCCTAGTCAGCAACTGCATCCAAGTTATTTCCAGACACAATCAAGGCCAATTCATTACCAGCAGTACCTGCCTCACCTTTATGGAAGTTATGGCACCAATGGATTACCTTATCTTGGAGGTGCTGCTATGACTAGCTTCTTTAACCCTATGATTGGTATGTTTGGGGAGATGGTCTTGACAAGGATTTTTGGCATCTCAGATGCGAATTTGTTTGCTTACCCTCATAATGGAAGTGGCAGTCCTAGGATGAGAAGGCAGGAAATGCAGATTGACAAGTCTCTGAACAGACTTTCTATCTTCCTCCTATGTTGCATCGTTTTGTGTCTTCTCTTATTTTGA 753 0.4422 MESKYFDSNGEVSLKQKSKSISAEPTISTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDVRSSSVEPDQQQTCPVCKSEISHTSVVPLYGRGTSNSESKAKKLQMSIGIPHRPPPYNLNAVLTSARAPIPHPSQQLHPSYFQTQSRPIHYQQYLPHLYGSYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGISDANLFAYPHNGSGSPRMRRQEMQIDKSLNRLSIFLLCCIVLCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00684 250 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Pumo11g00684 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 108 IPR013083 -
Pumo11g00684 250 SUPERFAMILY RING/U-box 33 96 - -
Pumo11g00684 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Pumo11g00684 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Pumo11g00684 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Pumo11g00684 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo11g00684 250 CDD RING-HC_AtRMA-like 35 85 - -
Pumo11g00684 250 SMART ring_2 37 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00684 Pumo-Chr11 24135509 24137907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00684 1 236 C3H Transcription Factor Family AT4G27470 46.988 2.33e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00684 K10666 - gmx:100817526 422.165