Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00681 ATGGCTTCTAACACCATCATCCAATGCACCTCTTCATCTCACTGTACATATGACGTGTTTGTGAGCTTCTGCGGTGAAGACACACGCAATAACTTCATTGGTTTTCTTTTTCAAGCTCTTGGTAGAAAAGGCATTGATGCCTTCAAAGATGATAAAGATCTCAAGAAAGGTGAATCCATAGCACCTGAGCTGCTACAAGCCATTGAAGGGTCTCGCCTTTTTGTTGTTGTCTTTTCAAAGAACTATGCTTCCTCAACTTGGTGTTTGCGTGAACTAGCAGAGATGTTCAATTGCATTGTAAAATCACAAAGACCTGCTCTGCCTATTTTTTATGATGTTGATCCAACAGAAGTGAGAAAACAAACAGGATATTATGAGAAAGCCTTTACCAAACATGAAGAAAGATTCATAGAAGATAAAGAGAAGGTGGTGGAAGTGCAGAGATGGAGAGAAGCACTAACACGAGTAGCCAATCTCTCTGGTTGGGATATCCGAAATAAGCCACAATATGCTGAGATTGAAGAAATTGTTCAAAAGATAACAAATATATTGGGTTACAAATTTTATTGTCTTCCAAATGATGGTCTAGTTGGGATGGAATCTCGGGTTGAAGAATTGGCAAGGGTTCTATATTTGGGGTCGGTTAATGACGTTCGAGTTGTCGGAATTAGTGGGATGGGCGGAATAGGAAAAACAACTCTTAGTCATGCTTTATATGAAAGAATCTCTCATCAATATGACTTTTGTTGTTTCATTGATGATGTAAGCAAAATTTATCGAGATTCTGGTACATTAGGTTTACAAAAGCAGTTACTTTATCGATCTCTAGATGAAAAAGATCTAGAGATTTGCAATGTATCTGAGGGGACATGCTTGTTATGGACTAGGCTACACCATGCAAGGGCACTAATAATTCTTGATAATGTTGATCAAGTTGGACAGCTAAAGATGTTTACAGGGAATAGAGATACTTTGTTGCGTGAATGCCTAGGTGGAGGGAGCAAAATCATCATAATTTTTAGGGATAAACATATATTGAGAACACACGGAGTAGATGATGTTTATCAAGTCCAGGCATTGAATCGCGAACATGTTGTTCAATTGTTTTGTCAAAATGCTTTCAAAAGTAATTATATTATGAGTGATTATCAAAAGTTGACTTATGACATACTATCACATGCTAATGGTCATCCCTTAGCAATTGAAGTATTGGGCAAATCTTTGTTTGGTCGAGATGTCTTACAATGGAGTGCATTGGCTAAGCTAAGAGAAATTAAAAGTAAAGATATTATGGATGTGCTACGAATAAGTTTTGACCAATTAGAGGACATAGACAAGGAAATATTTCTAGATATTGCTTGCTTCTTCAGCCGTTATCCAAGGCATTATGTGGAGGAGATTCTAGATTTTCGTGGATTTCATCCTGAATATGGCCTGCAAGTTCTTGTTGATAAATCGCTCATAACCATGATGGGTGGGGTAATTCATATGCATGACTTGTTGAGTGATTTGGGCAAGTGTATTGTTCGAGAAAAATCACCTAAGGTGCCAAGGAAGTGGAGTAGGTTGTGGGATTACAAAGATATCCACAAAGTTATGTCAGACAACGAGGCAGCAAAAAATCTTGAAGTCATCGTTATTAGAAATCGACACAACTTTCCTCAAACCACAATGATGGCTGATGCGCTATCAAAAATTAGTCATCTTAAGTTGCTCAAACTCGAAGAAGTGAAATTTTCAGGAAGACTTGATGATCTTTCCAATGAATTAGGGTATCTTAATTGGAATAAATATCCTTTTGAGTGTTTGCCCCCGAGTTTTCAGCCGAACAATCTTGTTGAGTTGCTCTTACCTAAGAGCAACATCAAAAAACTTTGGGAAGGCAGAAAGCTGTATAGTATCCAATTATTAGATGAACCATGGGATGCAAAACATTTGAAGATTTATAAATGCGAAGCTCGAATTCATTCCCAATCAACATCTTCCTACTCCAGAGAACATAAAAATTCAGTTAGTTCTTTGTTGGCTTCATCGCTAGTTTTCCCATATATCCGTAAACTTGATCTAAGTTTCTGTAATTTACTTCAAATCCCTGATGCTATTGGAAATTTATGCTGCCTAGAATTCCTAGATTTAAGTGGAAACAATTTTGCTACACTGCCCAACCTCAAGGAGCTTTCCAAACTGTTCCGTTTAAACTTACAACATTGCAAGCAGTTGAAATATTTGCCTGAGCTCCCTTCACGATTTTGCTTCCTGTCACCAACTTACACGTGGTCATGGATAAAACCTCTACTTACCGGAAGACATGCAGGATTATACATTTTCAAGTGTTTGCAGTATCAGGAGCAGCATCCATATACACTTCTTTATTACCCTCGCATGGAATACGCAAGAATTGGAAGTATTACTCCTGGAAGTGAAATACCAAGGTGGTTCAACAATCAGCATGTGGGCATGGACAGTTTAATAAGCATAGATGCATCTCCGGTTATGCATGACGACAATAATTGGATTGGCGTTGCGTGTTGTGCAATCTTCGTGGTACAGCATGAAACAGTCTTGGCAATGGGTCCTTCAAAAAGAAAAGAAAGGTTTCCTTTTTCTTGTTACAATTCCGGTGGATTTTTATGGAGATCTACAATTAGTCTCGGATGA 2658 0.3804 MASNTIIQCTSSSHCTYDVFVSFCGEDTRNNFIGFLFQALGRKGIDAFKDDKDLKKGESIAPELLQAIEGSRLFVVVFSKNYASSTWCLRELAEMFNCIVKSQRPALPIFYDVDPTEVRKQTGYYEKAFTKHEERFIEDKEKVVEVQRWREALTRVANLSGWDIRNKPQYAEIEEIVQKITNILGYKFYCLPNDGLVGMESRVEELARVLYLGSVNDVRVVGISGMGGIGKTTLSHALYERISHQYDFCCFIDDVSKIYRDSGTLGLQKQLLYRSLDEKDLEICNVSEGTCLLWTRLHHARALIILDNVDQVGQLKMFTGNRDTLLRECLGGGSKIIIIFRDKHILRTHGVDDVYQVQALNREHVVQLFCQNAFKSNYIMSDYQKLTYDILSHANGHPLAIEVLGKSLFGRDVLQWSALAKLREIKSKDIMDVLRISFDQLEDIDKEIFLDIACFFSRYPRHYVEEILDFRGFHPEYGLQVLVDKSLITMMGGVIHMHDLLSDLGKCIVREKSPKVPRKWSRLWDYKDIHKVMSDNEAAKNLEVIVIRNRHNFPQTTMMADALSKISHLKLLKLEEVKFSGRLDDLSNELGYLNWNKYPFECLPPSFQPNNLVELLLPKSNIKKLWEGRKLYSIQLLDEPWDAKHLKIYKCEARIHSQSTSSYSREHKNSVSSLLASSLVFPYIRKLDLSFCNLLQIPDAIGNLCCLEFLDLSGNNFATLPNLKELSKLFRLNLQHCKQLKYLPELPSRFCFLSPTYTWSWIKPLLTGRHAGLYIFKCLQYQEQHPYTLLYYPRMEYARIGSITPGSEIPRWFNNQHVGMDSLISIDASPVMHDDNNWIGVACCAIFVVQHETVLAMGPSKRKERFPFSCYNSGGFLWRSTISLG 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00681 885 Pfam NB-ARC domain 201 420 IPR002182 GO:0043531
Pumo11g00681 885 Gene3D Ribonuclease Inhibitor 521 757 IPR032675 -
Pumo11g00681 885 SUPERFAMILY RNI-like 539 751 - -
Pumo11g00681 885 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Pumo11g00681 885 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Pumo11g00681 885 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 755 IPR044974 GO:0006952
Pumo11g00681 885 Gene3D - 191 353 IPR027417 -
Pumo11g00681 885 ProSiteProfiles Leucine-rich repeat profile. 706 727 IPR001611 GO:0005515
Pumo11g00681 885 SUPERFAMILY "Winged helix" DNA-binding domain 429 533 IPR036390 -
Pumo11g00681 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 452 IPR027417 -
Pumo11g00681 885 PRINTS Disease resistance protein signature 296 310 - -
Pumo11g00681 885 PRINTS Disease resistance protein signature 220 235 - -
Pumo11g00681 885 PRINTS Disease resistance protein signature 724 740 - -
Pumo11g00681 885 PRINTS Disease resistance protein signature 394 408 - -
Pumo11g00681 885 SMART till_3 16 159 IPR000157 GO:0007165
Pumo11g00681 885 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Pumo11g00681 885 Gene3D - 359 442 IPR042197 -
Pumo11g00681 885 Gene3D - 14 187 IPR035897 -
Pumo11g00681 885 Pfam Leucine Rich Repeat 611 628 IPR011713 -
Pumo11g00681 885 Pfam TIR domain 17 180 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00681 Pumo-Chr11 23973508 23976898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00681 197 804 WRKY Transcription Factor Family AT5G45050 29.938 4.49e-66 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00681 - - vra:106780741 839.721