Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00670 ATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCTGAAAGATCAGTGAATGTCTTGGAATGCTTGCGCATATTTAGGGAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTCACTATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCATTTATTGAGTCAGCAACTTGTTCAGATTCTGGCTCAGATACTTTAGAAGAAGCTGTTGAGAACAAAACTCCAGCACCTACCCCTAGCCATGATATGCATCAGCAGAGATGTATAGCAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCTAGTTGCATGTTGTCAAGTGTGGTGTTTGTGGCACCTGCATCATTATTAGATGACACAGAAGAAAATACAATGAAAAATAGGAGAAAGGATGAGGAAGTGGCAGGAAAGAAGCAATCATTTCCAGCAAAACAGGTACTGCAGATGGAGGCAAGTTGGTATACTAGTCCTGAAGAGGTTGCTGGTGCTACAACTTCCTGTGCTTCAGACGTTTACCAGTTGGGAGTTCTCCTTTTTGAGCTATTTTGTCCACTCAGCTCAAGAGAAGAAAAGAGCAGAACCATGTCCAGCCTAAGACATAGAGTTCTTCCTCCTCAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGGAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAAGTGTGAAGCAGCGGCAGAACTTAGAGAAAGGATAGATGATCAGGAGTTGTTGCTAGAATTCCTTTCGTTAATTCAACAGAAAAAAGGGGAAGCTTATGAGAAGTTGCAACATACTATCTCATTTCTGTGTTCAGATATTGAAGAAGCGACAAAGCAGAAAAATGTATTTAAAGAGATAACTGGCACTGGACTAGGGAGTGATGATTGTTCAACATCACGTTTCCCATCCATTACTGTTGTTGGGAATGAGGATTCTACTTGTCTATGGACCAGAAAACGGGTCAGAACTGATCCGTATGTTGATGACACTGAAGGATGTGATAATAACATAGGTGATGATCAGAAAAATGACAGAAGTATTCTTTCAAAAAGTCCACGGTTTTTTAATAACTTAAAGGAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCAGCCTATTCCTCAGGGAAACTTGTGGTTCAACATTCACCTATGGCTACTGATGATAGAGGGTCTGTTGTTGTGACTGAAAGGAGTTGTGTCAATAAAGTTGCATCAAAAGAGCAGTGTAGGGAGGGCAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGCGCAAGTACCTATCTTTCAGTAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAGAATTTTTTGCTACTGCAGGAGTAAATAAGAAGATTAAAGTTTTTGAATGTAACACAACCATAAATGAGAATCGTGATATCCACTATCCAGTAGTGGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGCTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGCCAAGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGAGTATGGTCTATTGATTTCTCATCAGCAAACCCAACATTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGGCAATCAGACCGAACATTCTTTTGCATGTTTTATGTGTTTAA 1878 0.4031 MGDISLRLWLDKPERSVNVLECLRIFREIVEIVHVAHSQGIVVHYVRPSCFVMSSFNHVSFIESATCSDSGSDTLEEAVENKTPAPTPSHDMHQQRCIASEDFVPVKTSTASLTDSSCMLSSVVFVAPASLLDDTEENTMKNRRKDEEVAGKKQSFPAKQVLQMEASWYTSPEEVAGATTSCASDVYQLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPNSRPTIGELLQSEFLNEPRDDIEKCEAAAELRERIDDQELLLEFLSLIQQKKGEAYEKLQHTISFLCSDIEEATKQKNVFKEITGTGLGSDDCSTSRFPSITVVGNEDSTCLWTRKRVRTDPYVDDTEGCDNNIGDDQKNDRSILSKSPRFFNNLKELESAYFLTRCKSAYSSGKLVVQHSPMATDDRGSVVVTERSCVNKVASKEQCREGKSPWTNPFLEGLRKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEFFATAGVNKKIKVFECNTTINENRDIHYPVVEMVSRSTLSSTCWNTYIKSQIASSNFEGVVQLWDVTRSQVQSEMREHEQRVWSIDFSSANPTLLASGSDDGSVKLWNINQAIRPNILLHVLCV 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00670 625 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00670 625 SUPERFAMILY WD40 repeat-like 488 612 IPR036322 GO:0005515
Pumo11g00670 625 ProSitePatterns Trp-Asp (WD) repeats signature. 596 610 IPR019775 -
Pumo11g00670 625 Pfam WD domain, G-beta repeat 572 609 IPR001680 GO:0005515
Pumo11g00670 625 Gene3D - 461 622 IPR015943 GO:0005515
Pumo11g00670 625 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 611 IPR001680 GO:0005515
Pumo11g00670 625 PANTHER PROTEIN SPA1-RELATED 2 3 613 IPR044630 GO:0009640
Pumo11g00670 625 MobiDBLite consensus disorder prediction 68 92 - -
Pumo11g00670 625 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Pumo11g00670 625 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 576 611 - -
Pumo11g00670 625 Coils Coil 297 317 - -
Pumo11g00670 625 Gene3D Transferase(Phosphotransferase) domain 1 4 266 - -
Pumo11g00670 625 SMART WD40_4 527 566 IPR001680 GO:0005515
Pumo11g00670 625 SMART WD40_4 481 516 IPR001680 GO:0005515
Pumo11g00670 625 SMART WD40_4 569 609 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00670 Pumo-Chr11 23439487 23442430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00670 493 610 Miscellaneous Gene Families AT5G08390 28.814 7.08e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Pumo11g00670 WD40 4.9e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00670 K26557 - gmx:100813635 1082.78