Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00652 ATGGTGCTGCAAAGATGTTATCCTATGGCTTTTTTGCAATGGGGTTTCTTGGCTTGCTTGCTTTGCTTTTCTGTGGGACTTGAAACCCCAGCCAGATCCTGTGACAAGCATGATCTATTGGCCCTGAAGGAATTTGCAGGCAACCTTACAAAAGGGTCTATCATCACAGAATGGTCAGATGATGTTGTCTGCTGCAAATGGGTTGGAGTTTATTGTGATGATGTGGTTGATGGAGCAGCTGCTAGTAGAGTGTCCAAGTTGATTCTACCTGGAATGGGTCTCAACGGCACAATTTCGAGTTCTTTAGCCTTTCTAGATCAGCTAAAGGAGCTCAATCTTTCGTTCAATCGTCTCCAAGGTGAATTGTCTTCTGAGTTTTCTAATTTGAAGCAGTTAGAAGTTCTTGACTTGAGCCATAATATGCTGTCTGGACCAGTTGGTGGGGCACTTTCCGGTTTGCAATCCATTCAAATACTGAATATTTCTAGCAATTTGTTTGTTGGGGACCTCTTCTATTTTGGGGGATTACAACATCTCCTTGCTCTCAACATAAGCAACAATTCATTCACCGGCCAGTTCAATTCTCAAATTTGCAGCTCCTCCAAGGGTATTCATATTCTTGATATATCCAAAAATCATTTTGCTGGTGGTCTTGAATGGTTGGGCAACTGTAGCACATCTCTCCAAGAGTTACATTTGGATTCCAATTTATTTTCTGGCCCTCTTCCTGATTCCTTGTATTCAATGTCAACCTTGGAGCAGCTCTCAGTCTCTGCGAACAACCTCTCTGGTCAGTTAAGCAAGGAGCTAAGTAACCTCTCAAGCCTAAAATCTCTAATAATTTCTGGAAATCATTTTTCAGCGGAACTCCCAAATGTTTTTGGGAATCTTTTGGTCCTTGAACAACTAATAGGAAACTCCAATTCATTTTCTGGATCATTGCCTTCCACCTTGGCCTTATGCTCAAAACTCCGAGTGCTTGATCTTCGAAATAATTCTTTGACAGGTTCTGTTGGTCTTAATTTCACTGGGTTGTCTAATCTTTTCACATTGGACCTTGGTAGCAATCATTTTAATGGATCCCTTCCAAATTCCTTGTCCTATTGCCATGAATTGACAATGTTAAGCCTTGCTAAAAATGAATTAATTGGCCAAATTCCTGAGAGCTATGCAAACCTCACTTCACTTTTGACTCTGTCTTTGTCAAACAATAGCTTTGAGAACTTATCTGGGGCGCTTTATGTACTGCAGCAGTGCAAAAATCTCACCACTCTTGTCCTCACAAAGAATTTCCACGGTGAGGAAATTCCAGAAAATTTAACAGCAAGCTTCAAGAGCCTTGTGGTTTTAGCACTCGGAAATTGTGGTCTCAAAGGCCGTATTCCTGCTTGGCTGTTGAATTGCCCGAAATTGGAAGTTCTTGATTTGTCATGGAACCATTTGGAAGGTAGTGTCCCTTCTTGGATTGGTCAGATGGACCATTTGTTTTACTTGGATTTGTCAAATAATTCTCTTTCAGGAGAAATACCAAAAGGTTTGACAGAGCTGAGGGGCCTCATATCCCCCAATTATCATATATCAAGTCTCTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAATGGGCTGCAATATAACCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGCAATAACAGATTAAGTGGAACAATATGGCCTGAAATTGGTCGTTTAAAAGAACTTCATATCTTGGATTTAAGCAGGAACAACATCACTGGCACCATTCCTAGCTCTATTTCTGAGATGAAGAATTTGGAAACATTAGATTTATCTAATAATAGTCTCTTTGGAACTATTCCTCCATCATTTAACAGCCTCACATTCTTGTCTAAGTTCAGTGTGGCATATAACCACTTATGGGGATTAATTCCAATTGGAGGACAATTTTCAAGTTTCCCAAATTCAAGTTTTGAGGGCAACTGGGGGCTTTGTGGGGGGACATATCATCGTTGTAACAATGAAAAAGATGTGGGCTTGAGGCCCAACCATGTGGGAAAATTTGGTAAAAGCAACGTCCTTGGCATAACAATTGGGTTAGGAGTAGGCCTTGCACTGCTTCTTGCAGTTATTCTGCTAAGAATGTCAAAGAGGGATGAGGATAAGCCAGTTGATAACTTTGATGAGGAGCTTAGCTGGCCAAACAGGATGCCTGAAGCACTTGTTTCTTCAAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCTCAGTTGAAGATTTGTTAAAATCCACTAGCAATTTTAACCAAGAAAATATAATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGGGAATCTTCCGAATGGCACAACGGTAGCTATCAAGAAACTTTCAGGGTACTGTGGTCAGGTGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGTTATTGTCAGCATGTCAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTTGATTATTGGCTGCATGAGAATGAGGATGGAAATTCAGCTCTAAAATGGGATGTCAGACTCAAGATTGCCCAAGGTGCAGCTCATGGATTAGCTTATTTGCACAAGGAGTGTGAACCGCATATTGTGCATCGAGATATTAAATCTAGCAACATACTTTTGGATGATAAATTTGAAGCTTATTTGGCTGACTTTGGTCTCTCAAGGCTACTTCAACCCTACGATACCCATGTTTCAACAGATTTAGTAGGAACTTTAGGATATATTCCTCCGGAATATAGTCAGGTACTGAAAGCAACTTTCAAGGGTGATATTTATAGCTTTGGTGTTGTTCTTGTTGAGCTTCTTACTGGTCGAAGGCCTGTAGAAGTCATCGTCGGGCAACGTAGCAGGAATCTAGTGTCTTGGGTGTTGCAGATGAAATCTGAGAATAGGGAGCAAGAAATTTTTGATCCAGTCATTTGGCACAAGGATAATGAGAAACAGCTCTTAGAGGTACTAGCTATTGCTTGTAAATGTATAGATGAAGATCCAAGGCAGAGACCCCATATTGAATTAGTTGTTTCATTGCTTGATAGTGTAGGATTTGATGGCTCTGAACAGTCATCATCTTAA 3159 0.4068 MVLQRCYPMAFLQWGFLACLLCFSVGLETPARSCDKHDLLALKEFAGNLTKGSIITEWSDDVVCCKWVGVYCDDVVDGAAASRVSKLILPGMGLNGTISSSLAFLDQLKELNLSFNRLQGELSSEFSNLKQLEVLDLSHNMLSGPVGGALSGLQSIQILNISSNLFVGDLFYFGGLQHLLALNISNNSFTGQFNSQICSSSKGIHILDISKNHFAGGLEWLGNCSTSLQELHLDSNLFSGPLPDSLYSMSTLEQLSVSANNLSGQLSKELSNLSSLKSLIISGNHFSAELPNVFGNLLVLEQLIGNSNSFSGSLPSTLALCSKLRVLDLRNNSLTGSVGLNFTGLSNLFTLDLGSNHFNGSLPNSLSYCHELTMLSLAKNELIGQIPESYANLTSLLTLSLSNNSFENLSGALYVLQQCKNLTTLVLTKNFHGEEIPENLTASFKSLVVLALGNCGLKGRIPAWLLNCPKLEVLDLSWNHLEGSVPSWIGQMDHLFYLDLSNNSLSGEIPKGLTELRGLISPNYHISSLFASAAIPLYVKRNKSANGLQYNHASSFPPSIYLSNNRLSGTIWPEIGRLKELHILDLSRNNITGTIPSSISEMKNLETLDLSNNSLFGTIPPSFNSLTFLSKFSVAYNHLWGLIPIGGQFSSFPNSSFEGNWGLCGGTYHRCNNEKDVGLRPNHVGKFGKSNVLGITIGLGVGLALLLAVILLRMSKRDEDKPVDNFDEELSWPNRMPEALVSSKLVLFQNSDCKDLSVEDLLKSTSNFNQENIIGCGGFGLVYKGNLPNGTTVAIKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHVNDRLLIYSYLENGSLDYWLHENEDGNSALKWDVRLKIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQVLKATFKGDIYSFGVVLVELLTGRRPVEVIVGQRSRNLVSWVLQMKSENREQEIFDPVIWHKDNEKQLLEVLAIACKCIDEDPRQRPHIELVVSLLDSVGFDGSEQSSS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00652 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Pumo11g00652 1052 PRINTS Leucine-rich repeat signature 602 615 - -
Pumo11g00652 1052 PRINTS Leucine-rich repeat signature 495 508 - -
Pumo11g00652 1052 SUPERFAMILY L domain-like 55 303 - -
Pumo11g00652 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 676 - -
Pumo11g00652 1052 SMART LRR_sd22_2 393 411 - -
Pumo11g00652 1052 SMART LRR_sd22_2 492 515 - -
Pumo11g00652 1052 SMART LRR_sd22_2 578 601 - -
Pumo11g00652 1052 SMART LRR_sd22_2 105 128 - -
Pumo11g00652 1052 SMART LRR_sd22_2 321 342 - -
Pumo11g00652 1052 SMART LRR_sd22_2 129 155 - -
Pumo11g00652 1052 SMART LRR_sd22_2 602 628 - -
Pumo11g00652 1052 SMART LRR_sd22_2 249 275 - -
Pumo11g00652 1052 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Pumo11g00652 1052 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 82 218 - -
Pumo11g00652 1052 SUPERFAMILY L domain-like 457 664 - -
Pumo11g00652 1052 Gene3D Phosphorylase Kinase; domain 1 734 843 - -
Pumo11g00652 1052 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 735 843 - -
Pumo11g00652 1052 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 78 304 - -
Pumo11g00652 1052 FunFam Leucine-rich repeat receptor-like protein kinase 844 1050 - -
Pumo11g00652 1052 SUPERFAMILY L domain-like 223 510 - -
Pumo11g00652 1052 Gene3D Ribonuclease Inhibitor 35 154 IPR032675 -
Pumo11g00652 1052 SMART LRR_typ_2 578 601 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 129 152 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 273 296 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 492 516 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 393 416 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 345 369 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 468 491 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 602 625 IPR003591 -
Pumo11g00652 1052 SMART LRR_typ_2 105 128 IPR003591 -
Pumo11g00652 1052 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Pumo11g00652 1052 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Pumo11g00652 1052 SUPERFAMILY Protein kinase-like (PK-like) 750 1039 IPR011009 -
Pumo11g00652 1052 Pfam Protein kinase domain 769 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00652 1052 ProSiteProfiles Protein kinase domain profile. 768 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00652 1052 Gene3D Ribonuclease Inhibitor 391 677 IPR032675 -
Pumo11g00652 1052 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Pumo11g00652 1052 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Pumo11g00652 1052 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Pumo11g00652 1052 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Pumo11g00652 1052 SMART serkin_6 768 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00652 1052 Gene3D Transferase(Phosphotransferase) domain 1 844 1045 - -
Pumo11g00652 1052 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Pumo11g00652 1052 Gene3D Ribonuclease Inhibitor 170 390 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00652 Pumo-Chr11 22857627 22860785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00652 39 1051 Receptor kinase-like Gene Family AT1G55610 33.956 1.79e-165 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pumo11g00652 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00652 - - gmx:100789534 1942.55