Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00647 ATGGAGGCCAGAAGTGTGGAGAGGAAGAGAGCATTGGTTGAGAGGGTGAGAAAGAATAGCACAGTGGAAGAGGAAGTGGAAAATGAAGTGGAGGAGGAGGATGAAAGTGGTGTTAGTATTACTGAAGACGAGAAGAAGAAAGGGGTTAGTAGTAGTGGTGGTGGTGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTTTGTGAATTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGCAGACGGTTGGCCGGACACAACGAACGGCGCCGGAAAAGCAACCCAGAAGCTGCCAATGAGGGCAACGGCAAAGGCCATCACCCTAAGGAAACAACACACTGCAGGCTTGCAGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTACAAGTCTTTCAATATCAGATGA 579 0.5147 MEARSVERKRALVERVRKNSTVEEEVENEVEEEDESGVSITEDEKKKGVSSSGGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAANEGNGKGHHPKETTHCRLADERGRIQMNLPGSSGYKSFNIR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00647 192 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 152 IPR044817 GO:0003677
Pumo11g00647 192 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Pumo11g00647 192 SUPERFAMILY SBT domain 70 150 IPR036893 GO:0003677|GO:0005634
Pumo11g00647 192 MobiDBLite consensus disorder prediction 142 173 - -
Pumo11g00647 192 FunFam Squamosa promoter-binding-like protein 14 64 133 - -
Pumo11g00647 192 Pfam SBP domain 72 145 IPR004333 GO:0003677
Pumo11g00647 192 MobiDBLite consensus disorder prediction 1 73 - -
Pumo11g00647 192 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Pumo11g00647 192 MobiDBLite consensus disorder prediction 136 192 - -
Pumo11g00647 192 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00647 Pumo-Chr11 22767661 22769400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00647 1 192 SBP-box Gene Family AT3G15270 45.078 3.79e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo11g00647 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00647 - - gmx:100800646 315.464