Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00614 ATGCTTACAAAAAGCACACAATTAACAAAATGGGGCCTGTGGTCCACACCCCTTTGCACCTCCTTTTGTGCCTTTCTGCTTCATATAAACTCCCTCTTTCACTTCATTGCTCCAAAAAGTCCAGGCTCAACAAGAAGTTCACTTGCTCCTCCAATATCTCCTTCATCATTGTCACCATCATCATTCACCATTCACCACCCCTTTTGCACAATGGAGGCCAGGAGTGTGGAGAGGAAGAGAGCATTGGTTGAGAGGGTGAGAAAGAATAGCACAGTGGAAGAGGAAGTGGAAAATGAAGTGGAGGAGGAGGATGAAAGTGGTGTTAGTATTACTGAAGACGAGAAGAAGAAAGGGGTTAGTAGTAGTGGTGGTGGTGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTTTGTGAATTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGCAGACGGTTGGCCGGACACAACGAACGGCGCCGGAAAAGCAACCCAGAAGCTGCCAATGAGGGCAACGGCAAAGGCCATCACCCTAAGGAAACAACACACTGCAGGCTTGCAGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTACAAGTCTTTCAATATCAGATGA 789 0.4956 MLTKSTQLTKWGLWSTPLCTSFCAFLLHINSLFHFIAPKSPGSTRSSLAPPISPSSLSPSSFTIHHPFCTMEARSVERKRALVERVRKNSTVEEEVENEVEEEDESGVSITEDEKKKGVSSSGGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAANEGNGKGHHPKETTHCRLADERGRIQMNLPGSSGYKSFNIR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00614 262 MobiDBLite consensus disorder prediction 212 243 - -
Pumo11g00614 262 Pfam SBP domain 142 215 IPR004333 GO:0003677
Pumo11g00614 262 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 222 IPR044817 GO:0003677
Pumo11g00614 262 MobiDBLite consensus disorder prediction 87 143 - -
Pumo11g00614 262 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Pumo11g00614 262 MobiDBLite consensus disorder prediction 206 262 - -
Pumo11g00614 262 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Pumo11g00614 262 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Pumo11g00614 262 FunFam Squamosa promoter-binding-like protein 14 134 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00614 Pumo-Chr11 21568791 21570580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00614 126 227 SBP-box Gene Family AT1G53160 66.990 2.53e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo11g00614 SBP 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00614 - - gmx:100800646 315.464