Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00601 ATGGCTCCGAGGGATATCAATAGATCCAACGTTGTTGTTGCTGCCGGACCCAACCCGACCCATAAAGAGATCCGATACCGCGGCGTGAGGAAGCGGCCGTGGGGCCGCTACGCCGCCGAGATCCGCGACCCGGGCAAGAAGACCCGCGTCTGGCTCGGCACGTTCGACACCGCGGAGGAGGCGGCGCGTGCGTACGACGCGGCGGCGCGTGAGTTCCGTGGCGCGAAGGCCAAGACCAATTTCCCCACCTACGGGGAACTGATGACCCATCACGCGGCGGCGGCGGCGGCGCGTAGCCCCAGCCAGAGCAGCACGCTGGAGTCGTCCTTCTCCGCCGCCGCTGGACCTCACTCTCACCACCCCACTCGCCGCCGCGGGCGCGTTGGTGTTCCCGGTGGCGCGTCCCGTGGTGTTCTTCGACGCGTTCGCGCGTGGCGAGGTGCGCGCGTCGTTCGATCTTCCCCTGGCCGCGTTCGCTCAGAGCAGCGACTCGGACTCGTCCTCGGTCGTGGACTACGAGCGGGTCCCACATCGGAGAGTGTTGGATCTTGA 552 0.6775 MAPRDINRSNVVVAAGPNPTHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTYGELMTHHAAAAAARSPSQSSTLESSFSAAAGPHSHHPTRRRGRVGVPGGASRGVLRRVRAWRGARVVRSSPGRVRSEQRLGLVLGRGLRAGPTSESVGS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00601 183 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 122 - -
Pumo11g00601 183 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Pumo11g00601 183 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Pumo11g00601 183 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Pumo11g00601 183 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pumo11g00601 183 MobiDBLite consensus disorder prediction 92 135 - -
Pumo11g00601 183 MobiDBLite consensus disorder prediction 96 112 - -
Pumo11g00601 183 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Pumo11g00601 183 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pumo11g00601 183 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pumo11g00601 183 SMART rav1_2 25 86 IPR001471 GO:0003700|GO:0006355
Pumo11g00601 183 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00601 Pumo-Chr11 20905109 20906049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00601 18 109 AP2-EREBP Transcription Factor Family AT3G15210 78.947 4.25e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo11g00601 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00601 K09286 - gmx:100785455 179.874