Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00597 ATGGATAGCTACTACCATCACCACCATCACCCTCACTTTGACAACAACGGTGAACCACATTTACCTCCTGGCTTCAGATTCCACCCCACAGACGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAGCCATGGGAGCTTCCTGAGAAAGCTAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGGTTACGCACCAATAGGGCCACTGAAGCTGGTTATTGGAAAGCCACAGGGAAAGACAGAGAGATCTATAGCTCCAAAACTTGTTCCCTCGTTGGCATGAAGAAAACCTTGGTTTTCTATAGAGGAAGGGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCACGAGTATCGCTTAGAAGGCAAATTCGCTTATCACTACCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATATCACGCGTGTTTCAGAAGAACACCACCGGCAGTGGCTCCACCGTGTCGGCCACCGCCACCACCACCGTTGGTTCTAAGAAAACAAGAATGAGCACATCCAACACTAGCAGCAACATGAGCCTGTGCCCCGAACCGGGTTCACCCTCTTCCATTTACCTTCCACCGCTTCTAGAATCTTCTCCTTACGCCGCCGTCGCCAGCACCGCCACCACCACCGCGGCGGCAACATTCAACGACCGCGAAAGCTGCTCCTTCGACAGCGCCGCCAACAACAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCGCCGCCGCCGCCGCCTTCGACCACCTCGTTCCGCCGCCGGAGCCTCCGCTAGACCCTTTCTCTCGCTTTCATCGGAACAACAACAACGTTGGTGTCGGAGTCTCCAACTTCCCGTGCCTCAGATCCTTGCACGACAACCTTAACTTTCCCTTCTTTTTCACTCCAACGGGCCACGTCAGCAGCGCTGACGTGGCATCATTTGGAGCCGTCGGGAACTGGCCGGCGCCGGAGGAGCCGAGGGTGGCTGACGGTGGCTCCGGCATGGCGATTGTACCGTCCGAGTTGGATTGCATGTGGGGCTATTGA 1119 0.5469 MDSYYHHHHHPHFDNNGEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNTTGSGSTVSATATTTVGSKKTRMSTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYAAVASTATTTAAATFNDRESCSFDSAANNNQREHVSCFSTMSAAAAAFDHLVPPPEPPLDPFSRFHRNNNNVGVGVSNFPCLRSLHDNLNFPFFFTPTGHVSSADVASFGAVGNWPAPEEPRVADGGSGMAIVPSELDCMWGY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00597 372 ProSiteProfiles NAC domain profile. 21 173 IPR003441 GO:0003677|GO:0006355
Pumo11g00597 372 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
Pumo11g00597 372 Gene3D NAC domain 30 177 IPR036093 GO:0003677|GO:0006355
Pumo11g00597 372 MobiDBLite consensus disorder prediction 178 211 - -
Pumo11g00597 372 FunFam NAC domain-containing protein 100-like 30 177 - -
Pumo11g00597 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 242 - -
Pumo11g00597 372 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00597 Pumo-Chr11 20778662 20780707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00597 1 372 NAC Transcription Factor Family AT5G53950 51.111 3.42e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g00597 NAM 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00597 - - gmx:100788671 641.728