Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00585 ATGGGGGATTTCATGTTCTCCTTCAAGGCCCAAGAACATGCACACCACCACCAAATTATTAGAGCAAATAAGCACAACAACAAGAAGAGGCTAACTGAGGACCAGGTTGCTGTTCTTGAGAAGTGCTTTGCCTCCAACATGAAGCTCGAACCCGAGCAGAAGTTCCACCTTGCAAACCAACTTGGTGTGCCTCCAAGGCAAGTTGCCATTTGGTACCAAAACAAAAGGGCTCGATGGAAGACCCAGAGCCTCGAGGTGGACCATGGTGTGCTTCAGGCAAGGCTAGAGAATGTGATGGCTGAGAAGAAGCAGCTTGAGAAAGATGTGGAAAGGCTCAAAGCTGAGCTGAAGAAGGCTCAAGAGATGTTGCTAATTAGCAATAATAATGTCAAAGGTGGAGACCATAATAATAATAATAATAATAACAATGCTTCTTGTGAATTTTCAACTTCTTTTGAAGAGGGAGGGAGTTCTGGGGTGGTGCTTGATGATGCCACTCATCAACATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTCTATGCTTACTTCATGGGTGCAAATTATGGGTCAGCCTTGCATGAGAAAAGGGCATAA 609 0.4516 MGDFMFSFKAQEHAHHHQIIRANKHNNKKRLTEDQVAVLEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVMAEKKQLEKDVERLKAELKKAQEMLLISNNNVKGGDHNNNNNNNNASCEFSTSFEEGGSSGVVLDDATHQHHECWQSGEVMQVEELYAYFMGANYGSALHEKRA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00585 202 FunFam Homeobox-leucine zipper protein ATHB-52 16 84 - -
Pumo11g00585 202 SMART HOX_1 24 86 IPR001356 GO:0003677
Pumo11g00585 202 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Pumo11g00585 202 Pfam Homeodomain 27 80 IPR001356 GO:0003677
Pumo11g00585 202 Gene3D - 21 87 - -
Pumo11g00585 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 147 IPR045224 GO:0003700
Pumo11g00585 202 MobiDBLite consensus disorder prediction 128 150 - -
Pumo11g00585 202 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Pumo11g00585 202 SUPERFAMILY Homeodomain-like 12 83 IPR009057 -
Pumo11g00585 202 CDD homeodomain 28 83 IPR001356 GO:0003677
Pumo11g00585 202 Coils Coil 88 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00585 Pumo-Chr11 20577894 20578502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00585 26 196 Homeobox Transcription Factor Family AT5G53980 43.860 1.17e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo11g00585 Homeodomain 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00585 - - gsj:114378167 311.612