Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00584 ATGGATCGAATGAGTCAACAGTATTTTCAACAGTATTTACACTCCGAAAGTATCCATTTCAGAGGCTCAAACATCGCTCAGCCTAATATCTGCACAGTACTTACAGTTTCAGGGAACAGAACTAATCTAGATTCCCATTGTCTACTAGATGCTTATGACAACAGTACGATGTTTGGAATGACGCAATACAATGGAGTTCAGCATCAACATAATCTTGATATGGGGGTTCCAGCTGCTGCCAACTACCCTTCATCTAGTACGGCTGTATCTCTGAATCACAGAAGATGGAAAAATGCTGAAGGGATGAGAAGAAATTATCATTATGTCAATGCCTCAGCTAGATCTTCAGTTGCTCCCCCTAATGCAAGATATACTGAAAATGGCATCCCCTCACTACCACATTGTAGTTCGTGGAACAGATCAGGGGAGTCTATTATGGTGCGTGATCCTAACTGTTTGATTCAAGGAAACTATTTAGGTCAGCACTTTCAACCAGCTGCTCCTCTCTGGCCGGACCAACAGTTGAATAGCAATAATTATGATGGTCATGCTTTGGCTTGGCAACATTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATCAGAGAATGCAAGAATGGGTCCACAGAGATATCACGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCCCATCCTCCTCTTGTCAACCCACAGTACCATAGCTTTCATCATCAAACACAACCTGTGCAAGAGATCAGAGGTCGCTCCATCAACTTTCATCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATCCTTCACGCAGTTTTTCCATCCTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCCCCGCACCATTTGCAGGTGCACGTGTACACCAACCTCATAGAGGCAACATGCATGAGACAACTCTTAGACATGAAAATGTTCCTCCTGTGGCCTTTCTCCATGATGATGTTGCTATACTGGTTGACCATCATACTGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGTGAGCGGATTGGCAACGTAAAGACAGGTTTGACAGAGGAAATGATTATAAGTCAAATGAAGACAAAAACTTATTTACTACCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGAAACTGATTGTTGCATAATATGCCAGGATGAATATAAGAACCAAGAGAAGATTGGAATTCTTCGATGCGGGCACGACTATCACGCAGATTGTTTAAGGAAATGGTTACTTGAGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCAGAAGAGAAGTGTTAA 1362 0.428 MDRMSQQYFQQYLHSESIHFRGSNIAQPNICTVLTVSGNRTNLDSHCLLDAYDNSTMFGMTQYNGVQHQHNLDMGVPAAANYPSSSTAVSLNHRRWKNAEGMRRNYHYVNASARSSVAPPNARYTENGIPSLPHCSSWNRSGESIMVRDPNCLIQGNYLGQHFQPAAPLWPDQQLNSNNYDGHALAWQHSLPMPYVQAPSANGSSSENARMGPQRYHDTAGSRSGHRFPHPPLVNPQYHSFHHQTQPVQEIRGRSINFHPPVTAPSYRVPTNPSRSFSILIQDAIEMGARHVGPAPFAGARVHQPHRGNMHETTLRHENVPPVAFLHDDVAILVDHHTDMRLDIEDMSYEELLALGERIGNVKTGLTEEMIISQMKTKTYLLPTNAINLEEAASEEQETDCCIICQDEYKNQEKIGILRCGHDYHADCLRKWLLEKNVCPICKSEALTPEEKC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00584 453 Pfam Ring finger domain 401 443 IPR001841 -
Pumo11g00584 453 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 106 447 IPR045191 GO:0061630
Pumo11g00584 453 CDD RING-H2_RNF24-like 400 446 - -
Pumo11g00584 453 ProSiteProfiles Zinc finger RING-type profile. 402 443 IPR001841 -
Pumo11g00584 453 MobiDBLite consensus disorder prediction 197 229 - -
Pumo11g00584 453 SMART ring_2 402 442 IPR001841 -
Pumo11g00584 453 SUPERFAMILY RING/U-box 395 448 - -
Pumo11g00584 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 447 IPR013083 -
Pumo11g00584 453 MobiDBLite consensus disorder prediction 197 212 - -
Pumo11g00584 453 FunFam E3 ubiquitin ligase BIG BROTHER 362 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00584 Pumo-Chr11 20551153 20554574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00584 325 447 C3H Transcription Factor Family AT2G15530 45.161 2.02e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00584 K19041 - gmx:100779069 749.969