Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00583 ATGGATCGAATGAGTCAACAGTATTTTCAACAGTATTTTCACTCCGAAAATATCCATTTCAGAGGCTCAAACATCGCTCAGCCTAATATCTGCACAGTACTTACAGTTTCAGGGAACAGAACTAATCTAGATTCCCATTGTCTACTAGATGCTTACGACAACAGTACGATGTTTGGAATGACGCAATACAACGGAGTTCAGCATCAACATAATCTTGATATGGGGGTTCCAGCTGCTGCCAACTACCCTTCATCTAGTACGGCTGTATCTCTGAATCACAGAAGATGGAAAAATGCTGAAGGGGTGAGAAGAAATTATCATTATGTCAATGCCTCAGCTAGATCTTCAGTTGCTCCCCCTAATGCAAGATATACTGAAAATGGCATCCCCTCACTACCACATTGTAGTTCGTGGAACAGATCAGGGGAGTCTATTATGGTGCGTGATCCTAACTGTTTGATTCAAGGAAACTATTTAGGCCAGCACTTTCAACCAGCTGCTCCTCTCTGGCCGGACCAACAGTTGAATAGTAATAATTATGATGGTCATGCTTTGGCTTGGCAACTATCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATCAGAGAATGCAAGAATGGGTCCACAGAGATATCACGATACAGTTGGCAGCAGAAGTGGCCACAGATTTCCCCATCCTCCTCTTGTCAACCCACAGTACCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAGATCAGAGGTCGCTCCATCAACTTTCATCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATCCTTCACGCATTTCCTCCATCCTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCCCTGCACCATTTGCAGGTGCACGTGTACACCAACCTCATAGAGGCAACATGCATGAGACAACTCTTAGACATCAAAATCTTCCTCCTGTGGCCTTTCTCCATGATGATGTTGCTATACTGGTTGACCATCATACTGATATGCGCTTAGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGTGAGCGGATTGGCAATGTAAAGACAGGTTTGACAGGGGAAATGATTATAAGTCAAATGAAGACAAAAACTTATTTACTACCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGAAACTGATTGTTGCATAATATGCCAGGATGAATATAAGAACCAAGAGAAGATTGGAATTCTTCGATGCGGGCACAAATATCACGCAGATTGTTTAACGAAATGGTTACTCGAGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCAGAAGAGAAGTGTGTATAA 1365 0.4278 MDRMSQQYFQQYFHSENIHFRGSNIAQPNICTVLTVSGNRTNLDSHCLLDAYDNSTMFGMTQYNGVQHQHNLDMGVPAAANYPSSSTAVSLNHRRWKNAEGVRRNYHYVNASARSSVAPPNARYTENGIPSLPHCSSWNRSGESIMVRDPNCLIQGNYLGQHFQPAAPLWPDQQLNSNNYDGHALAWQLSLPMPYVQAPSANGSSSENARMGPQRYHDTVGSRSGHRFPHPPLVNPQYHSFHHQTQPVQEIRGRSINFHPPVTAPSYRVPTNPSRISSILIQDAIEMGARHVGPAPFAGARVHQPHRGNMHETTLRHQNLPPVAFLHDDVAILVDHHTDMRLDIEDMSYEELLALGERIGNVKTGLTGEMIISQMKTKTYLLPTNAINLEEAASEEQETDCCIICQDEYKNQEKIGILRCGHKYHADCLTKWLLEKNVCPICKSEALTPEEKCV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00583 454 MobiDBLite consensus disorder prediction 198 212 - -
Pumo11g00583 454 CDD RING-H2_RNF24-like 400 446 - -
Pumo11g00583 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 447 IPR013083 -
Pumo11g00583 454 ProSiteProfiles Zinc finger RING-type profile. 402 443 IPR001841 -
Pumo11g00583 454 SUPERFAMILY RING/U-box 395 448 - -
Pumo11g00583 454 MobiDBLite consensus disorder prediction 198 225 - -
Pumo11g00583 454 SMART ring_2 402 442 IPR001841 -
Pumo11g00583 454 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 107 447 IPR045191 GO:0061630
Pumo11g00583 454 FunFam E3 ubiquitin ligase BIG BROTHER 362 447 - -
Pumo11g00583 454 Pfam Ring finger domain 401 443 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00583 Pumo-Chr11 20525721 20528966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00583 325 447 C3H Transcription Factor Family AT2G15530 44.355 5.74e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00583 K19041 - gmx:100779069 746.888