Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00582 ATGGATCAAATGAGTCAACAAAGGCATGGCTACTTTCATTCTGAAAGTATCCATTTCAGAGGCAACAACATCTCTCAGCCTAATATCTGCACACTGGTGACAGCTTCAGGGAACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGGTGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTACCAACATATATTATTCTAGCATGAATCCTTCATCTAGTACGGCTGTATCTCTAAATGCTGAAGCTATGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTTCAGTTGCTCCCCCTAATGCAAGACACACAGAAAATGGCATTCCCTCACTACCACATTGTAGTTCGTGGAACAGATCAGAGGAGTCTATGATGGTGCGTGAGCCTAGCCGTATAATTCGAGGAAACTATTTAAGTCAACACTTTCAAGCAGCTGCTCCTCCCTGGCTGGACCAACAGTTGAATAGCAATGATAATGATGGTCATGCTTTGGCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATACAAGAATGGGTCCACAGAGATATCATGATACGGCTGGGAGCAGAAGTGGCCACAAATTTCCCTATCTTCCTGTTGTCAACCCACAGTACCATAGCTTTCATGATCAAACACAGCCTGTGCAAGAGATGAGAGGTCCCTCCATCAACTTTCATCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATCCATCACGCAGTTCTTCAATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCAGGTTCACGTGTATACCGACCTCATAGAGGCAACATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGGCCTTTCTCCAAGTTGATGATGTTACTTTACTGGTTGACCATCATAGTGATATGCGCTTAGACATTGAGGATATGTCTTATGAGGAACTTCTTGCATTAGGTGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAAACTTATTTATTACTACCTACTAATGCTATTAACTTGGAGGAGGCAACTTCTGAGGAACAGGAAACTGATTCTTGCATAATATGCCAGGAAGGATATAAAAACCAAGAGAAGATTGGAATTCTTCAATGCGGGCACGAATATCACGCAGATTGTTTAAAGAAATGGTTACTGGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGCATAA 1368 0.4189 MDQMSQQRHGYFHSESIHFRGNNISQPNICTLVTASGNGTNLDSHYLLDAYDNGMVYGMTQYNGVQHQHNLDMGVPAATNIYYSSMNPSSSTAVSLNAEAMRGNYQYFNASASSSVAPPNARHTENGIPSLPHCSSWNRSEESMMVREPSRIIRGNYLSQHFQAAAPPWLDQQLNSNDNDGHALAWHQSLPMPYVQAPSANGSSLENTRMGPQRYHDTAGSRSGHKFPYLPVVNPQYHSFHDQTQPVQEMRGPSINFHPPVTAPSYRVPTNPSRSSSIFIQDAIEMGARHVGAAPFAGSRVYRPHRGNMHETTLRHRNLPPVAFLQVDDVTLLVDHHSDMRLDIEDMSYEELLALGERIGKVNTGLSEEMITSQMKTKTYLLLPTNAINLEEATSEEQETDSCIICQEGYKNQEKIGILQCGHEYHADCLKKWLLVKNVCPICKSEALTPGEKCA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00582 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 448 IPR013083 -
Pumo11g00582 455 FunFam E3 ubiquitin ligase BIG BROTHER 362 448 - -
Pumo11g00582 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 107 448 IPR045191 GO:0061630
Pumo11g00582 455 Pfam Ring finger domain 401 444 IPR001841 -
Pumo11g00582 455 CDD RING-H2_RNF24-like 401 447 - -
Pumo11g00582 455 ProSiteProfiles Zinc finger RING-type profile. 403 444 IPR001841 -
Pumo11g00582 455 SMART ring_2 403 443 IPR001841 -
Pumo11g00582 455 SUPERFAMILY RING/U-box 396 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00582 Pumo-Chr11 20506633 20515181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00582 330 448 C3H Transcription Factor Family AT2G15530 50.420 1.37e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00582 K19041 - gmx:100808448 856.67