Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00578 ATGCACAAGTTTGCTTTTCTGCTTTGGTTTATCAACATGCATGTAATTATACATGGGAACACTGCAGCTAATGAGAGTTCAGATGTGAAGGGCATAATAGGATCTATTTTAGACAACACTTCTCGTATTGGCCAAGAGCATGCAGTGGCTATGAAGCTGGCATTGGAAGATTTTTATCAAAAAAGCAATCTGAGTTTTGCTCTGCATATAAGAAACTCTCAAGGGGATCCTCTTTTGGCAGCTATTGCAGCTAGAGATCTTATTGATAATCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGCAGAGACATCTTTAGTGGCTGAAGTGTGTAGCCAAAAGAGCATACCCCTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCAATGAAGAAGTGGCACTTCCTGCTGCAATCCTCACCTAGCCAAATTAAGCAGATGAAAGCTATTGCTGAAATTGTAAAGTCTTGGAAACTCTATAATATTACCATGATATATGAAGATGGAGACTCATCATCCACTGAAGTTTTGTCTCAACTCTCTGGAGCTCTTACAGAAGTTGGCACAGAATTAAGCAATGTTCTAGCAATTCCACCTCTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAGCTAAGAGAAGGACAACAATGTAGAGTCTTTATTGTCCATTTATCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAAGAATGAATATGATGGGGGAAAGTAATGTATGGATTACTACTGGTACCTTTGCAAGCCTTCTTTATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGGTTATTGGAGTCAAGAGCTATTTCCCAAAACTATGGAAGTGGCATGCAAACTTCTACCATAGATTTCGGAAAAAATTTAGCTTAGAGAATTTTGAAGAGTTTAATTATGAACCTGGGATCTTTGCAGCCCAGGCTTATGATGCTGCATGGATTGTGGTTGATGCAATGAGGGAAGCCAACCAAAAAGGGGGTCAACTTTTGCTAGAAAAGATTTTGCTTAGTAATTTTACAGGCTTGGGTGGAAAAATTCAGTTCACTGACCATAAATTAGCTCCAGCACATACTTTTAAAATCATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAAATCATTGGATCAAAATGCTTATTACAGTTCTTCGGTGAAGGAATTAGGAAAAGTAGTTAATCCAACATGTACCATACGACTGAGAATTGGTGTCCCCTCCATGTCAAACTTCAAACAGTATGCCAATGTTATTCAAGATCATTCTGAAAATGTTACTTCCTTCAAGTTCAAGGGATTTGCCATAGAGCTTTTTGATGTAACAGTAAAAAAATTGCCATACTGTCTGGAATATGATTATTTTGCCTTTAATGGCTCATATGATGAGCTGGTGAAGCAAGTTTATTGGCAGAAATATGATGCAGTTGTTGGTGATGTATCAATAGTGTCCACGCGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATACAGGACTGGTGATGATTGTTCCTGTTAAATCAAAGACAGGCAATAGAACTTGGCTATTCATGAAGCCTTTTACAAAACTCATGTGGGTTCTAATATTGGTCATCATTGTCTACAATGGTTTTGTTGTATGGATTATTGAAAGAAACCACCGCCCTGAACTGAAGGGCCCTATTCTGCATCAAACCACAACTATGCTGTGGTTGGCTTTCTGTTCTCTGTTCTCTTTTAATGGGGACAGATTGCATAGCAATTTATCAAGGGTGGCAATGGTGGTTTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACGGTTTGAACCAACTGTAGACAGCATTCAGCAGCTAAAGAACATCAATGCCATGGTAGGATGTGATAGAGGATCCTACTTGCAAAGATATCTCCAGGATGCATTGGGCATCAATGCCAATAACATCAAGCAATTTAACTCTATGGAGAGCCTTGCTGATGCCCTAAGAAACAAAGAAATAGCAGCTGTCTTCCTTGATGTTCCTGTGGCAAAAATTTTCCTTGCAAAGCACTGTAAAGGGTTTGTTCAAGCAGGGCCTACATACAAAATTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCATGGTGTAAACCAAGCCTTACTGAACATATCTGAAAGTGGCACACTACATGATCTAGAAAACAGTATGCTTGCATCAGAGGAATGTAAAGACATAATTGACCCAGGTGCAGAAACTACTAGTCTAAGCCCTACCAGCTTCATGGTGCCCTTCATCTTAACTGGAGGCACTTCAACAATTGCACTTTTAATTTACATATTTTCTGCGAGTTATTTATATTATGGACCAAGAACAATGTGGAGACTAATGATGGCTGTGATTAAACGCTGGAGATCTCATAAGAGACTGTTTTCAAGAAGAGTTCACAATGTTGCAGAAAGTCCTTTAAACTCTTCCAGCATTTCTAATTTGCCAGCTTTAGCTTAA 2571 0.3956 MHKFAFLLWFINMHVIIHGNTAANESSDVKGIIGSILDNTSRIGQEHAVAMKLALEDFYQKSNLSFALHIRNSQGDPLLAAIAARDLIDNQKVQAIIGPQTWAETSLVAEVCSQKSIPLLSLADATPEWAMKKWHFLLQSSPSQIKQMKAIAEIVKSWKLYNITMIYEDGDSSSTEVLSQLSGALTEVGTELSNVLAIPPLVSSSLSQQLEKLREGQQCRVFIVHLSFPLALHLFETAKRMNMMGESNVWITTGTFASLLYSLNASTISNMQGVIGVKSYFPKLWKWHANFYHRFRKKFSLENFEEFNYEPGIFAAQAYDAAWIVVDAMREANQKGGQLLLEKILLSNFTGLGGKIQFTDHKLAPAHTFKIINVIGRSYREIGFWSDGLGFSKSLDQNAYYSSSVKELGKVVNPTCTIRLRIGVPSMSNFKQYANVIQDHSENVTSFKFKGFAIELFDVTVKKLPYCLEYDYFAFNGSYDELVKQVYWQKYDAVVGDVSIVSTRYEYASFTQPYTDTGLVMIVPVKSKTGNRTWLFMKPFTKLMWVLILVIIVYNGFVVWIIERNHRPELKGPILHQTTTMLWLAFCSLFSFNGDRLHSNLSRVAMVVWLFVALIITQTYTASLASMLTVERFEPTVDSIQQLKNINAMVGCDRGSYLQRYLQDALGINANNIKQFNSMESLADALRNKEIAAVFLDVPVAKIFLAKHCKGFVQAGPTYKIGGYGFVFPRGSPLLHGVNQALLNISESGTLHDLENSMLASEECKDIIDPGAETTSLSPTSFMVPFILTGGTSTIALLIYIFSASYLYYGPRTMWRLMMAVIKRWRSHKRLFSRRVHNVAESPLNSSSISNLPALA 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00578 856 CDD GluR_Plant 419 759 - -
Pumo11g00578 856 Gene3D - 143 386 - -
Pumo11g00578 856 Gene3D - 722 756 - -
Pumo11g00578 856 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 810 IPR015683 -
Pumo11g00578 856 FunFam Glutamate receptor 147 309 - -
Pumo11g00578 856 Pfam Receptor family ligand binding region 49 375 IPR001828 -
Pumo11g00578 856 Gene3D - 532 661 - -
Pumo11g00578 856 Pfam Bacterial extracellular solute-binding proteins, family 3 448 756 IPR001638 -
Pumo11g00578 856 Gene3D - 681 721 - -
Pumo11g00578 856 SMART GluR_14 419 761 IPR001320 GO:0015276|GO:0016020
Pumo11g00578 856 SUPERFAMILY Periplasmic binding protein-like I 32 387 IPR028082 -
Pumo11g00578 856 FunFam Glutamate receptor 416 532 - -
Pumo11g00578 856 CDD PBP1_GABAb_receptor_plant 33 395 IPR044440 -
Pumo11g00578 856 Gene3D - 416 531 - -
Pumo11g00578 856 FunFam Glutamate receptor 533 671 - -
Pumo11g00578 856 SUPERFAMILY Periplasmic binding protein-like II 448 756 - -
Pumo11g00578 856 Gene3D - 39 366 - -
Pumo11g00578 856 Pfam Ligand-gated ion channel 757 791 IPR001320 GO:0015276|GO:0016020
Pumo11g00578 856 PIRSF IGluLR_plant 1 814 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00578 Pumo-Chr11 20449471 20454872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00578 6 852 Ion Channels AT2G29120 31.388 9.00e-128 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00578 - - gmx:100776939 1420.22