Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00577 ATGCATGTAATTATACCTGGGAACACTGCAACCAATGAGAGTTCTGATGTTAAGGGCATAATAGGAGCTATTTTTGATAGCAGCTCTCGCATTGGCCAAGAGCATGCAGTGGCTATGAAGCTGGCATTGGAAGACTTTTATCAAAAACACAATCAGAGTTTTTCTCTGCATGTAAGAGACTCTCAAGGGGATCCTCTTTTGGCAGCTATTGCAGCTAGAGATCTCATTGATAATCAGAAGGTGCAAGCCATCATTGGACTAGAAACATGGGCAGAGACACCTTTAGTGGCTGAAGTGTGTACCCAAAAGAGCATACCCCTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCAATGAAGAAGTGGCACTTCCTGCTGCAATCCTCACGTAGCCAAATTATGCAGATGAAAGCTATTGCTGAAATTGTGAAGTCTTGGAAACTCTACAATATTACCATGATATATGAAGATGGAGACTCTTCATCCACTGAAGTTTTATCTCTGCTCTCTGGAGCTCTTAAAGAAGGTGGCACAGAATTAAGCAATGTTATAGCAATTCCACCTTTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAGCTAAGAGAAGGACAATGTAGAGTCTTTATTGTCCATTTATCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAAGAATGAACATGATGGGGGAAGGTAATGTATGGATTACTACTGGTACCTTTACAAGCCTTCTTTATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGGTTATTGGAGTCAAGAGCTATATCCCAAAACTATGGAAGTGGCATGCCATCTTCTACCATAGATTTCGGAAAAAATTTAGCTCAGAAAATTTTGAAGAGTTTAATTATGAGCCTGGAATATTTGCTGCCCAGGCTTATGATGCTGCATGGATTGTGGTTGATGCAATGAGGGAAGCCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTGCTTAGTAATTTTACAGGCTTGGGTGGAAAAATTCAGTTCACTGACCATAAATTAGCTCCAGCACATACTTTTCAAATCATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAAATGGACTTGGTTTCTCAAAATCATTGGATCAAAATGCTTCTTACAATTCTTCGGTGAAGGAATTAGGAAAAGTTGTTAATCCAACATGTGCCATACGACTAAGGATTGGTGTCCCCTCCCTTTCAATCTTCAAACAGTATGCCAATGTTATTCAAGATCATTCTGAAAATGTTACTTCCTTCAAGGGATTTGCCATAGATCTTTTCGATGAAACAGTAAAAAAATTGCCATACAATCTGGAATATGATTATTTTGCCTTTAATGGCACATATGATGAACTGGTGAAGCAAGTTTATTGGAAGAACTATGATGCAGTTGTTGGTGATGTAACTATAGTGTCCACGCGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATACGGGAATGGTGATGATTGTTCCTGTGAAATCAAAGACAGGCAATAGAACGTGGCTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTAATTTTGGTCATCATTGTCTACAATGGTTTTGTTGTATGGATTATTGAAAAAAACCACCGCCCTGAACTGAAAGGCAATATTCTGCATCAAATCACGGCTATGCTGTGGTTGGCTTTCTGTTCTCTGTTCTCTAATGGGGACAAGTTACATAGCAATTTATCAAGGGTGGCAATGGTGGTCTGGTTTTTTATCGCTCTGATCATTACACAGATTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACAGTTTGAACCAACTGTAGAAAGCATTCAGCAGCTAAAGAACAGCAAAGCCATGGTAGGAATTGATAGAGGATCCTACTTGGAAAGATATCTCCAGGATGCATTGGGCGTGAGTGCTGAAAACATCAAGCAATTTGACTCACAAGAGAGCCATGCTAATGCCCTAAGAAACAAAGAAATAGCAGCTGTCTTCCTTGATGTTCCTGGGGCCAAAATTTTCCTTGCAAAGTACTGTAAGGGGTTTGTTCAAGCAGGGCCTACATACAAAGTTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCCTGATGTAAACCAAGCCCTGCTGAACATATCTGAAAATGGCACACTACGTGAACTGGAAAACAGTATGCTTGCATCAGAGGAATGTAAAGACATAATTGACCCAGGTGCAGAACCTGCTAGTACTAGTATTAGCCCTGCAAGCTTCATGGTGCCCTTCATCTTAACTGGAGGCACTTCAACAATTTCCCTCTTAATTTACATATTTTCTGAGAATTATTTATATCATGGACAGAGAACAATGTGGGGACTAATGATGGCTGTGATTAAACGTTGGAGATCTCATAAGAGACTGTTTTCAAGAAGAGTCTACAATGTTGCTGAAAGTCCTTTAAACTCTTGTAGCATTTCTAATTTGCCAGCTTTAGCTTAA 2529 0.4009 MHVIIPGNTATNESSDVKGIIGAIFDSSSRIGQEHAVAMKLALEDFYQKHNQSFSLHVRDSQGDPLLAAIAARDLIDNQKVQAIIGLETWAETPLVAEVCTQKSIPLLSLADATPEWAMKKWHFLLQSSRSQIMQMKAIAEIVKSWKLYNITMIYEDGDSSSTEVLSLLSGALKEGGTELSNVIAIPPLVSSSLSQQLEKLREGQCRVFIVHLSFPLALHLFETAKRMNMMGEGNVWITTGTFTSLLYSLNASTISNMQGVIGVKSYIPKLWKWHAIFYHRFRKKFSSENFEEFNYEPGIFAAQAYDAAWIVVDAMREANQKGGQLLLDKILLSNFTGLGGKIQFTDHKLAPAHTFQIINVIGRSYREIGFWSNGLGFSKSLDQNASYNSSVKELGKVVNPTCAIRLRIGVPSLSIFKQYANVIQDHSENVTSFKGFAIDLFDETVKKLPYNLEYDYFAFNGTYDELVKQVYWKNYDAVVGDVTIVSTRYEYASFTQPYTDTGMVMIVPVKSKTGNRTWLFMKPFTKLMWILILVIIVYNGFVVWIIEKNHRPELKGNILHQITAMLWLAFCSLFSNGDKLHSNLSRVAMVVWFFIALIITQIYTASLASMLTVEQFEPTVESIQQLKNSKAMVGIDRGSYLERYLQDALGVSAENIKQFDSQESHANALRNKEIAAVFLDVPGAKIFLAKYCKGFVQAGPTYKVGGYGFVFPRGSPLLPDVNQALLNISENGTLRELENSMLASEECKDIIDPGAEPASTSISPASFMVPFILTGGTSTISLLIYIFSENYLYHGQRTMWGLMMAVIKRWRSHKRLFSRRVYNVAESPLNSCSISNLPALA 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00577 842 CDD GluR_Plant 406 743 - -
Pumo11g00577 842 Pfam Bacterial extracellular solute-binding proteins, family 3 433 740 IPR001638 -
Pumo11g00577 842 PIRSF IGluLR_plant 1 818 IPR017103 -
Pumo11g00577 842 SUPERFAMILY Periplasmic binding protein-like I 20 374 IPR028082 -
Pumo11g00577 842 Gene3D - 690 750 - -
Pumo11g00577 842 SMART GluR_14 406 745 IPR001320 GO:0015276|GO:0016020
Pumo11g00577 842 CDD PBP1_GABAb_receptor_plant 21 382 IPR044440 -
Pumo11g00577 842 FunFam Glutamate receptor 403 517 - -
Pumo11g00577 842 SUPERFAMILY Periplasmic binding protein-like II 433 740 - -
Pumo11g00577 842 FunFam Glutamate receptor 518 655 - -
Pumo11g00577 842 Gene3D - 131 374 - -
Pumo11g00577 842 Pfam Receptor family ligand binding region 37 362 IPR001828 -
Pumo11g00577 842 FunFam Glutamate receptor 135 296 - -
Pumo11g00577 842 Pfam Ligand-gated ion channel 529 680 IPR001320 GO:0015276|GO:0016020
Pumo11g00577 842 Gene3D - 518 644 - -
Pumo11g00577 842 Gene3D - 21 353 - -
Pumo11g00577 842 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 795 IPR015683 -
Pumo11g00577 842 Gene3D - 403 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00577 Pumo-Chr11 20439252 20446561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00577 10 801 Ion Channels AT5G27100 31.280 1.24e-127 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00577 - - gmx:100776939 1392.48