Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00576 ATGCATGTAATTATACTTGGGATCACTGCAGCTAATGAGAGTTCAGATGCTAGGGGAATAATAGGAGCTATTTTAGATAACAGTTCTCGCATTGGCCAAGAGCATGCAGTGGCTATAAATCTGGCATTGGAAGATTTTCATCAAAAAAACAATCTGAGTTTTGCTCTGCATGTAAGAAACTCTCAAGGGGATCCTCTTTTGGCAGCTATTGCAGCTAGAGATCTTATTGATAATCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGCAGAGACATCTTTAGTGGCTGAAGTGTGTACCCAAAAGAGCATACCCCTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCAATGAAGAAGTGGCACTTCCTGCTGCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCTATTGCTGAAATTGTAAAGGCTTGGAATCTCTATAATATTACCATGATATATGAAGATGGAGACTCGTCATCCACAGAAGTTTTGTCTCAACTCTCTGGAGCTCTTACAGAAGTTGGCACAGAATTAAGCAATGTTCTAGCAATTCCACCTCTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAGCTAAGAGAAGGACAATGCAGAGTCCTTATTGTCCATTTGTCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAAGAATGAATATGATGGGGGAAGGTAATGTATGGATTACTACTGGTACATTTACAAGCCTTGTTTATTCCCTGAATGCATCCACTATCTCCAATATGCAAGGGATTATTGGAGTCAAGAGCTATATCCAAAATCTATGGTACCAACATGCAAACTTCTACCGTAGATTTCGGAAAAAATTTAGCTCAGAGAATTTTGAAGAGTTTAATTATGAGCCTGGGATCTTTGCAGCCCAGGCTTATGATGCTGCATGGATTGTGGTTGATGCAATGAGAGAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTACTTAGTGATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACAATAAATTAGATCCAGCACATACTTTTCAAATAATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACATGGTTTCTCAAAATCCTTGGATCAAAATGCTTCTTACAATTCCTCAGTGAAAGAATTAGGAAAAGTAGTTAATCCAACATGTGCCATACGACTAAGAATTGGTGTCCCCTCCACATCAACATTCAAACAGTATGTCAATGTTATTCAAGATCATTCTGGAAATGTCACTTCCTTCAAGTTCAAGGGATTTGCTATAGATCTTTTCAAAGAAACAGTAAAAAAATTGCCATACCACTTGGAATATGATTATTTTGCCTTTAATGGCACCACATATGATGAAATGGTGAAGAAAGTTTCTTCGAAGGAATATGATGCAGTTGTTGGTGATGTAGCAATAGTGTCCACACGTTATGAATATGTTTCATTCACTCAGCCCTATACTGATCCAGGAGTGGTGATGATTGTTCCTGTTAAATCAAAAACAGGCAACAGAGCATGGCTATTCATGAAGCCTTTCACAAAGCTCATGTGGGTTCTAATATTGGTCCTCATTGTCTACAATGGCTTTGTTGTATGGTTGATTGAAAGAAACCACCGCCCTGAACTGAAGGGCCCTATTCTGCATCAAACCACAACTATGCTGTGGTTGGCTTTCTGTTCTCTGTTCTCTTTGAATGGGGACAGATTGCATAGCAACTTATCAAGGGTGGCAATGGTGGTCTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACAGTTTGAACCAACTGTAGACAGCATTCAGAAGCTAAAGAACAGCAATGCCATGGTAGGATATGATAGAGGATCCTACTTGAAAAGATATCTCCAGGATGCATTGGGCATCAAAGCTGAAAACATCAAGCAATTTGACTCACAGGAGAGCTATGCTGATGCCCTAAGAAACAAAGAAATAGCAGCTGCCTTCCTTGATATCCCTGAGGCCAAAATTTTCCTTGCAAAGAACTGTAAAGGGTTTGTTCAAGCAGGGCCTACATACAAAATTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGATTCATAGTGTAAACCAAGCCCTACTGAACATATCTGAAAATGGCACACTACGTAATCTAGAAAACATTATGCTTGCATCACAGGAATGTAAAGACATAACTGACCCAGATGCAGAAACTACTAGTCTTAGCCCTGCAAGCTTCATGGTGCTCTTCATTCTAACTGGAGGCACTTCAACAACTGCTCTCTTAATTTACATTTTTTCTGTGAATTATATATGCCCTGGACAGAGAACAATGTGGAGTCTTATGATGGCTGTGATTAAACGTTGGAGATCTCAAAAGAGACTGTTTTCAAGAAGAGTCCACAATGTTGCAGAAAGTCCTTTAAACTCTTCCAATGTATCTAATATGCCAGCTTTAGCTTAA 2535 0.3976 MHVIILGITAANESSDARGIIGAILDNSSRIGQEHAVAINLALEDFHQKNNLSFALHVRNSQGDPLLAAIAARDLIDNQKVQAIIGPQTWAETSLVAEVCTQKSIPLLSLADATPEWAMKKWHFLLQSSPSQIMQMKAIAEIVKAWNLYNITMIYEDGDSSSTEVLSQLSGALTEVGTELSNVLAIPPLVSSSLSQQLEKLREGQCRVLIVHLSFPLALHLFETAKRMNMMGEGNVWITTGTFTSLVYSLNASTISNMQGIIGVKSYIQNLWYQHANFYRRFRKKFSSENFEEFNYEPGIFAAQAYDAAWIVVDAMRETNQKGGQLLLDKILLSDFTGLSGKIQFTDNKLDPAHTFQIINVIGRSYREIGFWSDGHGFSKSLDQNASYNSSVKELGKVVNPTCAIRLRIGVPSTSTFKQYVNVIQDHSGNVTSFKFKGFAIDLFKETVKKLPYHLEYDYFAFNGTTYDEMVKKVSSKEYDAVVGDVAIVSTRYEYVSFTQPYTDPGVVMIVPVKSKTGNRAWLFMKPFTKLMWVLILVLIVYNGFVVWLIERNHRPELKGPILHQTTTMLWLAFCSLFSLNGDRLHSNLSRVAMVVWLFVALIITQTYTASLASMLTVEQFEPTVDSIQKLKNSNAMVGYDRGSYLKRYLQDALGIKAENIKQFDSQESYADALRNKEIAAAFLDIPEAKIFLAKNCKGFVQAGPTYKIGGYGFVFPRGSPLIHSVNQALLNISENGTLRNLENIMLASQECKDITDPDAETTSLSPASFMVLFILTGGTSTTALLIYIFSVNYICPGQRTMWSLMMAVIKRWRSQKRLFSRRVHNVAESPLNSSNVSNMPALA 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00576 844 PIRSF IGluLR_plant 1 839 IPR017103 -
Pumo11g00576 844 Gene3D - 405 519 - -
Pumo11g00576 844 FunFam Glutamate receptor 403 520 - -
Pumo11g00576 844 Pfam Receptor family ligand binding region 37 362 IPR001828 -
Pumo11g00576 844 CDD PBP1_GABAb_receptor_plant 21 382 IPR044440 -
Pumo11g00576 844 Gene3D - 27 354 - -
Pumo11g00576 844 Gene3D - 131 374 - -
Pumo11g00576 844 SMART GluR_14 406 749 IPR001320 GO:0015276|GO:0016020
Pumo11g00576 844 Pfam Bacterial extracellular solute-binding proteins, family 3 435 743 IPR001638 -
Pumo11g00576 844 FunFam Glutamate receptor 521 659 - -
Pumo11g00576 844 Gene3D - 520 645 - -
Pumo11g00576 844 CDD GluR_Plant 406 744 - -
Pumo11g00576 844 Gene3D - 673 754 - -
Pumo11g00576 844 Pfam Ligand-gated ion channel 744 779 IPR001320 GO:0015276|GO:0016020
Pumo11g00576 844 FunFam Glutamate receptor 135 296 - -
Pumo11g00576 844 SUPERFAMILY Periplasmic binding protein-like II 407 744 - -
Pumo11g00576 844 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 792 IPR015683 -
Pumo11g00576 844 SUPERFAMILY Periplasmic binding protein-like I 20 377 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00576 Pumo-Chr11 20429689 20435348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00576 3 803 Ion Channels AT2G29120 31.132 1.25e-127 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00576 - - gmx:100818623 1508.04