Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00574 ATGCTAATAGTCTCCATGCTTAGGTTTCTTGGTAATAACAAACTAAATGGCACAATACCTCTGAAAAAAAGTGCATCTTTGCTCAACATAGACTTATCATATAACAACTTAAGAGGAAGTCTCCCTTCGTGGGTCACTGAACAAAATTTACAACTCAATTTGGTTGGCAACAACTTCCAAGCAGAGAATACAAAAAACAGTGGTTTACCTTCAGGATTAAGATGCCTACAACGTAACTTTCCTTGCAATCGCGGCACTGGAATCTATTACAACTTTTCAATCAATTGTGGTGGTCCTCAGATTGCATCTTCAAATGGAATTGTTTATGAAAGTGATAGCGAGGCACTTGGTCCTGCTACATATTTTGTGACAAACACACAAAGGTGGGCAGTTAGTAATGTGGGGTACTTTAGTGGAAGTAGTAGCCTAAGTAAGTATACAAGTTTTGTGCCAAATCAATTCATTGGTACTTCAGATTCCAACATGTTCCAAACAGCGCGATTGTCTGCTTCTTCATTGAGATATTATGGCTTAGGATTGGAAAATGGTAACTACAATGTGAGTCTCCAATTTGCTGAAAGCAAAATTCTGGATTCTGCCTCATGGAAAGGCGTTGGGAGGCGAGTCTTTGATGTTTACATCCAGGGGAATCTTGTTTTAAAGGATTTTGATATACAAAGGGAAGCTGGGAAGGTGTCTTTCAAAGCTGTTTTAAAGGAATTTAGAGCTCAAGTATTGGAAAACTACCTTGAGATCCACTTTTTTTGGGCGGGAAAAGGGACTTGTTGTATACCTGATCAATATACTTATGGACCCTTAATTTCAGCCATCAGTGCAACCCCAGATTTCACTCCTTCTGTTAGTAACAAGCCTCCAACCAGTAAGAAGAAAAGGATTGGTCTAAAAGTGGGAGTAGCTCTTGGCATTGGAGTTTTAAGCTTCTTTTCTACTTTTGTGGTTTATTTCATTATTCAAAGAAGACGACAACATCATGTTGATGAAAGAGAAGAGTTCCTAGGTATAGAAGCTAGACCACACACTTTCAGTTACTTTGAGTTAAAGAATGCCACAAATGACTTTGATTCTGCCAATAAGCTTGGAGAAGGTGGATTTGGTCCTGTTTATAAGGGGACACTTAGTGATGGAAGAGTGATTGCTGTTAAGCAACTATCTACACAATCTCATCAAGGAAACTCAGAGTTTATAACTGAGATTGCTACTATTTCAGCAGTGCAACATCGTAATCTCATTAAGTTACATGGATGCTGCATTGAGAGGGATGAACGGCTTCTTGTTTATGAGTATTTAGAGAATGGGAGTCTCCATCAATTACTATTTGGAAATGTAAGTTCAATCCTCAATTGGCCAATGCGATTTGGTATATGTAAAGGCATTGCACAAGGCCTAGCTTATCTCCATGAAGAATCATCATTACGTATAATTCACCGTGATGTGAAGGCTAGTAATATTCTACTTGACCATCAATTTGTTCCTAAAATATCAGATTTTGGTTTGGCTAAGCTATTTGATCAAGAAAAAACCCATTTAAGTACTAAACTTGTTGGGACAAGGGGATATTTGGCACCAGAATATGCCTGGCGTGGGCACCTCACAGAGAAAGCAGATGTATTTTCCTTTGGAATTGTAGCTCTAGAGATTGTTAGTGGAAGGTCGAATTGGGATTCTATGTTGGACACTGAAGAAAAAGAGACGTTTCTTCTAGAATGGGCTTGGAACCTCTACATGAACAACAACGAAATTGAGTTGGTGGATTCTAGATTGCAAGAGTTTGATGAGACAGAAGTGAAACGTGTCGTTGGCATTTCTCTATTGTGCACACAAGCCTCACCTCTCATACGACCATCCATGTCCCGCATAGTGGCAATGCTGTTAGGTGATGTTGAAGTGACGTGCGTAACATCAATTCCTGAGTACTTGGCTTACATAAAGTCTGATTATGTAACTGAATTGAAGAATACAACAAATGGAACAGATGTGAGTCATCACACTTCAACAAACACTAGCATTTAG 2031 0.39 MLIVSMLRFLGNNKLNGTIPLKKSASLLNIDLSYNNLRGSLPSWVTEQNLQLNLVGNNFQAENTKNSGLPSGLRCLQRNFPCNRGTGIYYNFSINCGGPQIASSNGIVYESDSEALGPATYFVTNTQRWAVSNVGYFSGSSSLSKYTSFVPNQFIGTSDSNMFQTARLSASSLRYYGLGLENGNYNVSLQFAESKILDSASWKGVGRRVFDVYIQGNLVLKDFDIQREAGKVSFKAVLKEFRAQVLENYLEIHFFWAGKGTCCIPDQYTYGPLISAISATPDFTPSVSNKPPTSKKKRIGLKVGVALGIGVLSFFSTFVVYFIIQRRRQHHVDEREEFLGIEARPHTFSYFELKNATNDFDSANKLGEGGFGPVYKGTLSDGRVIAVKQLSTQSHQGNSEFITEIATISAVQHRNLIKLHGCCIERDERLLVYEYLENGSLHQLLFGNVSSILNWPMRFGICKGIAQGLAYLHEESSLRIIHRDVKASNILLDHQFVPKISDFGLAKLFDQEKTHLSTKLVGTRGYLAPEYAWRGHLTEKADVFSFGIVALEIVSGRSNWDSMLDTEEKETFLLEWAWNLYMNNNEIELVDSRLQEFDETEVKRVVGISLLCTQASPLIRPSMSRIVAMLLGDVEVTCVTSIPEYLAYIKSDYVTELKNTTNGTDVSHHTSTNTSI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00574 676 CDD STKc_IRAK 366 630 - -
Pumo11g00574 676 Gene3D Phosphorylase Kinase; domain 1 321 435 - -
Pumo11g00574 676 Pfam Malectin domain 91 277 IPR021720 -
Pumo11g00574 676 ProSiteProfiles Protein kinase domain profile. 360 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00574 676 Gene3D Transferase(Phosphotransferase) domain 1 436 638 - -
Pumo11g00574 676 FunFam Leucine-rich repeat receptor-like protein kinase 89 281 - -
Pumo11g00574 676 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 657 - -
Pumo11g00574 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Pumo11g00574 676 Gene3D - 90 281 - -
Pumo11g00574 676 Pfam Protein kinase domain 362 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00574 676 SMART serkin_6 360 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00574 676 FunFam Leucine-rich repeat receptor-like protein kinase 329 435 - -
Pumo11g00574 676 FunFam Putative LRR receptor-like serine/threonine-protein kinase 436 641 - -
Pumo11g00574 676 SUPERFAMILY Protein kinase-like (PK-like) 342 630 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00574 Pumo-Chr11 20360688 20394661 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00574 9 655 Receptor kinase-like Gene Family AT1G56120 61.515 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo11g00574 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00574 - - qsu:111995102 912.524