Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00561 ATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACGATTGACCGGAGTTGATATAGCAACAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGGGAATTGCGAATTGCCACTGAAGGTTTTAGTCCTGCAAATAAGATAGGGCAGGGAGGTTTTGGAGCGGTCTATAAGGGAAAGCTGAGAAATGGTTCTCTGGTAGCTATAAAGGTTTTATCAGCTGAATCGAGACAAGGGGTCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGCATGGATGCTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGTAGCATCCAATTCAGTTGGCCTGCAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACACATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGATCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTGCACCAAACCTGACCCATATTAGTACCCGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATACGCAATCAGAAATCAAGTGACTAGAAAATCAGATGTCTATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTCACAAGGGCTTGGGACTTGTATGAGAGTGGGGAGGCAGAAAAATTGGTGGATGCTTTTCTAGAAGGAGACTTCAACATTGAGGAGGCAGTCAGATTTTGTAAGATTGGTCTACTTTGCACACAGGATTCGCCTCAGCTCCGGCCCTCTATGTCCACTGTGCTTGAGATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGGATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCTGGTAAACAAAAAGGCAAGGCTGAAGTGGATAGTAAATCTCCGTTGGCTGAAGGGAAGCACGACGAGTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATCGAAGCAATTAG 1176 0.4303 MTSCFHLFRKKGSSSGTRLTGVDIATDVSEIQNVNIYTYRELRIATEGFSPANKIGQGGFGAVYKGKLRNGSLVAIKVLSAESRQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGSGHSSIQFSWPARRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIAPNLTHISTRVAGTAGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWDLYESGEAEKLVDAFLEGDFNIEEAVRFCKIGLLCTQDSPQLRPSMSTVLEMLLGEKDVNEEDVTKPGMIFEFVEAKSAGKQKGKAEVDSKSPLAEGKHDESSSSGTMSSFATMTFTAIYDRSN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00561 391 SMART serkin_6 49 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00561 391 SUPERFAMILY Protein kinase-like (PK-like) 28 320 IPR011009 -
Pumo11g00561 391 Gene3D Phosphorylase Kinase; domain 1 23 124 - -
Pumo11g00561 391 Gene3D Transferase(Phosphotransferase) domain 1 125 335 - -
Pumo11g00561 391 FunFam cold-responsive protein kinase 1 21 124 - -
Pumo11g00561 391 Pfam Protein kinase domain 52 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00561 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Pumo11g00561 391 MobiDBLite consensus disorder prediction 348 365 - -
Pumo11g00561 391 MobiDBLite consensus disorder prediction 348 375 - -
Pumo11g00561 391 ProSiteProfiles Protein kinase domain profile. 49 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00561 391 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 332 - -
Pumo11g00561 391 CDD STKc_IRAK 55 320 - -
Pumo11g00561 391 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 349 - -
Pumo11g00561 391 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00561 Pumo-Chr11 19877632 19882011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00561 26 337 Receptor kinase-like Gene Family AT1G56120 54.114 1.27e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo11g00561 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00561 - - gmx:100797257 727.243