Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00559 ATGTCACATTCTTCCGGGAAACCCGAGTTAGGGCAACTCAGCGAGCGGTTCCGCGACTCACTGAGTTGCTCCGAGGATGATACCAACAAGCCCGATTTCCGAGAACTCGATTTGGGGTCGCCGGTTTCCACATTGCGGCCACGTCACCACCACAGTGCACCCACCACAAGCAGCAGCACGAGTACTAGCAGCGGTTCAAACGGGTCGGGTTCGGGTCGGAACGGGAACGGCACGGTTTCCAAGAGATCCGATTCCGGCGAGCTGTCTGGGTCCAGCGAGACCAACAGCCCGACCCGGGTGTCGAGACCGGGTCACCGGAGATCCAATTCGGGGCAGAGCCAGAGATCTCCGTCGTCTTCCTCCTCCGCCGCCGTGAATTCGCCGCCGCCGAACGTGCTCCCGGCCGGGAACATCTGCCCGTCCGGGAGGGTTCTGAAGGTATCGGCGGCGGCGAGCCGGAGCTCCAGGACGGATGTTCTGGGCTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGTGGGGTGGAAAAGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTGGCGGTGATGTGGCGAGTGCTAGGATCGCCGGCGATTCGGCGAGGCGCGGCGGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTATAAGAGAGGGCACTTTGCTGAGGCCTTGTGTTTGTATGATCGGGCAATTGCGATGTCGCCGGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGCTTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGGAATGCTGTTTCTCAGGTTAGGACAGGTTGAGGATGCTAGGAAGCATCTTTGTTATCCTGGGCTGCAGCCGGATCCTTCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGCGATGTACGGAGGATACGAGATTGGAAAAGTGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAGCTACACCAGATAGATGATGCTGAATCGTGTTTATCACGGATTCCCACAAGCGAGCCGCGTCCTGGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCTGAGGCTTATTGCTACTTCGTTAGATCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAACGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCTAGAGCTCGACTGCGTGGCAATGATCTTTTCAAATCAGAAAGGTTCACTGAGGCGTGCTCGGCGTACGGGGAAGGTTTGAGGCCTGACCCTTCAAACTCTGTCCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTACGCATCCAACCAAATTACACTAAAGCCATTCTTCGAAGAGCTGCCTCAAATAGCAAGTTAGAGAGGTGGGAAGAAGCAGTAAAAGATTATGAGCTTTTGCGGAGAGAACTACCAGATGACAATGAAGTTGCCGAAAATCTGTTTCATGCGCAAGTAGCATTAAAGAAATCCCGTGGGGAAGAAGTACATAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGGGCTGCAATATCCTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTTGCAATGTAAACAGATAGCACCGTTCGTGAATACACTATGTAGTCGCTATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGCAAGCCCTGCAGTCGCCACTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2043 0.5228 MSHSSGKPELGQLSERFRDSLSCSEDDTNKPDFRELDLGSPVSTLRPRHHHSAPTTSSSTSTSSGSNGSGSGRNGNGTVSKRSDSGELSGSSETNSPTRVSRPGHRRSNSGQSQRSPSSSSSAAVNSPPPNVLPAGNICPSGRVLKVSAAASRSSRTDVLGSGTGNYGHGSIMWGGKGGGGGGGGGGGGDVASARIAGDSARRGGVDPEEVKRMGNEEYKRGHFAEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLGMLFLRLGQVEDARKHLCYPGLQPDPSELQKLQIVEKHINKCGDVRRIRDWKSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQIDDAESCLSRIPTSEPRPGSLSQARFFGMFSEAYCYFVRSQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRPDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQIAPFVNTLCSRYPSINFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00559 680 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 677 IPR044534 -
Pumo11g00559 680 SMART tpr_5 446 479 IPR019734 GO:0005515
Pumo11g00559 680 SMART tpr_5 352 385 IPR019734 GO:0005515
Pumo11g00559 680 SMART tpr_5 242 275 IPR019734 GO:0005515
Pumo11g00559 680 SMART tpr_5 400 433 IPR019734 GO:0005515
Pumo11g00559 680 SMART tpr_5 480 513 IPR019734 GO:0005515
Pumo11g00559 680 SMART tpr_5 208 241 IPR019734 GO:0005515
Pumo11g00559 680 SMART tpr_5 514 547 IPR019734 GO:0005515
Pumo11g00559 680 MobiDBLite consensus disorder prediction 178 214 - -
Pumo11g00559 680 MobiDBLite consensus disorder prediction 1 138 - -
Pumo11g00559 680 MobiDBLite consensus disorder prediction 19 34 - -
Pumo11g00559 680 Pfam Tetratricopeptide repeat 214 274 - -
Pumo11g00559 680 Pfam Tetratricopeptide repeat 482 513 IPR001440 GO:0005515
Pumo11g00559 680 Gene3D Glutaredoxin 573 679 - -
Pumo11g00559 680 SUPERFAMILY TPR-like 208 436 IPR011990 GO:0005515
Pumo11g00559 680 Pfam Tetratricopeptide repeat 402 433 IPR019734 GO:0005515
Pumo11g00559 680 FunFam TPR repeat-containing thioredoxin TTL4 572 679 - -
Pumo11g00559 680 CDD TRX_family 585 666 - -
Pumo11g00559 680 MobiDBLite consensus disorder prediction 49 128 - -
Pumo11g00559 680 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Pumo11g00559 680 Gene3D Tetratricopeptide repeat domain 206 566 IPR011990 GO:0005515
Pumo11g00559 680 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Pumo11g00559 680 Coils Coil 520 540 - -
Pumo11g00559 680 SUPERFAMILY Thioredoxin-like 483 678 IPR036249 -
Pumo11g00559 680 Pfam Thioredoxin 587 672 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00559 Pumo-Chr11 19790819 19794923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00559 445 590 U-box Gene Family AT3G07370 28.415 3.21e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00559 - - gmx:100805790 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00559 11 19790819 19794923 Pumo11g00559 11 19790819 19794923 ECH
Pumo11g00559 11 19790819 19794923 Pumo4g03180 4 65370978 65374247 PCT