Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00538 ATGGCGAATCGCTGTGGAGCGTGCGCCTCACGAAGTGATTCGTGTAACGAATCTTGCATGTACAAAGTCATAAACTACGCTAATGAGAATTCAGAAGAATTCGATATCTTGAAGGCTTACTACTATCGCGTTGATGATAGGGTTTCTCAGGTGACTAAGGTGGAAGACCGTCGTGACTGTATCACCTCCATGGTCGAGGAGGCACTGATTAGAAAGAACGAACCTGTCCTTGGGAGTGTGGGGATCATTCGGGAACTCCGTTCCCAGCTCCAAATTTTGGAGTTGAAACTGGAATTCAAGAAGAGAAAAATTCAACCATTAAGAAAAAAGCTGGCTTACTACTATCGCGTTGATGATAGGGTTTCTCAGGTGACTAAGGTGGAAGACCGTCGCGACTGTATCACCTCCATGGTCGAGGAGGCACTGATTAGAAAGAACGAACCTGTCCTTGGGAGTGTGGGGATCATTCGGGAACTCCGTTCCCAGCTCCAAAATTTGGAGTTGAAACTGGAATCCAAGAAGAGAAAAATTCAACCATTAAGAAAAAAGCTGGTAAAACACTAG 564 0.4521 MANRCGACASRSDSCNESCMYKVINYANENSEEFDILKAYYYRVDDRVSQVTKVEDRRDCITSMVEEALIRKNEPVLGSVGIIRELRSQLQILELKLEFKKRKIQPLRKKLAYYYRVDDRVSQVTKVEDRRDCITSMVEEALIRKNEPVLGSVGIIRELRSQLQNLELKLESKKRKIQPLRKKLVKH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00538 187 Coils Coil 83 103 - -
Pumo11g00538 187 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Pumo11g00538 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 104 - -
Pumo11g00538 187 Pfam Lateral organ boundaries (LOB) domain 121 173 IPR004883 -
Pumo11g00538 187 Pfam Lateral organ boundaries (LOB) domain 4 99 IPR004883 -
Pumo11g00538 187 Coils Coil 156 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00538 Pumo-Chr11 19223551 19224358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00538 2 92 AS2 family AT1G31320 27.473 1.43e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo11g00538 LOB 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00538 K21435 - dcr:108227054 48.9062