Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00536 ATGTCTTTTAACTTTGTTCTTCCATCAATTCACAGCGCTGATCCCTTTGCCAAGAAGGACTGGCACGATATCAAGGCCCCTTCCGTCTTCCAGGTCAAGAATGTTGGCAAAACCCTCGTCAGTCGTACCCAGGGTACCAAGATTGCTTCTGAAGGACTCAAACATCGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGGGATGAGGACCATGCCTTCAAGAAGATTTGTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTTTGGGGAATGGATTTTACAACTGACAAGTTGAGGTCCTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCACGTGAATGTGAAGACCACTGATAATTACACTTTGAGGATGTTCTGCATTAGGTTTACTAAGAGGCGTAGTAACCAGATCCGCAGGAAGATGAGAGAGATAATGGTTAACCAGGTAACATCCTGTGATTTGAAAGAATTGGTCCGCAAGTTCATCCCTGAGATGATTGGCAAAGAGATTGAAAAGGCAACATCTAGCATCTATCCTCTTCAGAATGTGTTCATTCGTAAAGTTAAGATTCTGAAAGCTCCAAAGTTTGATCTTGGGAAATTGATGGAGGTTCGTGGGGATTACTCAGAAGATGCTGGTGCAAAGGTTGACAGACCTGCCGACGAAACAATTGCTGAGGAAGCCACTGAAGTAGTTGGAGCTTGA 720 0.4403 MSFNFVLPSIHSADPFAKKDWHDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFKKICLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVNVKTTDNYTLRMFCIRFTKRRSNQIRRKMREIMVNQVTSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVRGDYSEDAGAKVDRPADETIAEEATEVVGA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00536 239 ProSitePatterns Ribosomal protein S3Ae signature. 53 65 IPR018281 GO:0003735|GO:0005840|GO:0006412
Pumo11g00536 239 PANTHER 40S RIBOSOMAL PROTEIN S3A 14 230 - -
Pumo11g00536 239 Pfam Ribosomal S3Ae family 12 199 IPR001593 GO:0003735|GO:0005840|GO:0006412
Pumo11g00536 239 Hamap 40S ribosomal protein S1 [RPS3A]. 1 236 IPR027500 GO:0003735|GO:0005840|GO:0006412
Pumo11g00536 239 SMART Ribosomal_S3Ae_2 11 199 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00536 Pumo-Chr11 19170433 19173556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00536 12 239 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 76.955 3.75e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00536 K02984 - gmx:100805519 423.705