Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00523 ATGGTGAGGCTCAACTTGTTCATGCTTTGCTTATCTGCCTTGTTATATGCTGTTAATGCATTGAACACTGATGGGGTGGCTCTTCTGTCACTCCAGAGGCACTGGACATTTGTGCCTCCTCCCATAAACTCGAGTTGGAATGCTTCTGATTCCACTCCATGCTCTTGGTTAGGAGTCCAGTGTGACAATAACCACAATGCAATCTTTCTTAATCTCTCTGGATACTCAATTTCAGGTCTATTAGGACCTGAAATTGCACTCTTGAGTCACTTGCAAACACTTGACTTGACCTCAAACAACTTCTCAGGGAAAATGCCTCCTGAGTTAGGAAATTGTAGTCTGCTTGAGAACCTGAACCTTGCTGATAACAGCATCAGTGGTCAAATACCTGGTAGTTTTAGAAACTTGCAGAATTTAGTGTCTTTAAACATTATGAACAATACGCTAACTGGTCAAATTCCTGAGTTCTTGTTTCAACTTCAACACTTGGAAGATCTTCTCCTGAGACAAAACAATTTGTCAGGAAGGATTCCCCCATCCATTGGAAACTGCAGTGTCAGCAATAATAGACTTGAGGGTACCATTCCACCATTGGGTTCTGGCAGATGTAACAATTTACATTATTTAGACCTGTCATTCAATAAATTTAGTGGAGGCATACCTTCAAGCTTGGGAAATTGCATCAGATTAACAGAATTTTATGCTCTCAACACAAATTTAGGAGGCAGCATCCCATCATCCTTGGGCCAACTAACTGAGCTTTCTATTCTTCGCCTTGAATTCAATCATTTGACTGGACAAATACCTCCAGAAATTGGTAATTGTAGGTCCTTAAAAGTGTTGATGTTAAATAACAATGAACTTGAGGGAGAGATTCCAAGTAAATTAGGAATGCTAAGTCAATTGCAAGATCTTAGGCTTCATTACAACAATTTGACAGGTGGAATTCCAGTGAGCCTTTGGAAAATTCCTAGCCTTGAGTATGTGCATATGTATTACAATAACCTTTCTGGGGAGTTACCTTCAGAATTGGCAGAACTCAAACAATTGAAAAATATCACATTGTATAACAACCAATTCTCTGGAGTCATTCCTCAAAACTTAGGAATCAATAGCAGTTTACAGCAGTTGGATATCTCATATAATTACTTCACTGGCAAAATCCCACCTAATCTTTGCTTTGGACAGCAATTAGAAAGGCTAATCCTGGCTTCAAATCAATTTCAAGGTGGTATACCTCTTGACATAGGAAGGTGTACAACTCTTATGAGGTTGCGTCTTGATGGAAACAACTTAACAGGACCTCTACCTGACTTTACAAGCAATAGTAGTCTCACCTACATGGACATCAGTGTGAACAATATCAGTGGAGCAATTCCAACAAGTTTGGGAAACTGCACAAATCTTACTGATGTTATTTTGTCCCACAACAATTTTTCAGGGAACATACCCTTTGAGCTAGGAAGCCTTGTGAAACTTCAGAGGCTGAACCTTTCTCACAACAAGTTGGAAGGTCCTTTGCCACCTGAGCTGTCCAATTGTAACAAAATGGAATACTTTGATGCTGGATTCAATTCTCTAAATGGCTCATTCCCTTCAAGTTTGAGAACTTGGACAGGGTTGACCACATTAAATTTAAGGGAAAATCATTTCACTGGTGGTATCCCAACTTTCTTATCAGAATTTAAACACCTTTCTGATCTACATCTTGGAGGAAACGTTTTTGGAGGCCAAATTCCTAGATCAATTGGTGAGTTGCAGAATCTTCTTTATGAGTTGAATCTAAGTGCTAATGAGTTGACAGGTGAAATTCCTCCAGAGATTGGGAAACTGAAATTGCTGCAAAGCCTGGATATTTCTCTTAACAATCTGACTGGAAAAATTGAAGTTCTTGAATATCTCTCTTCATTGGTTGCACTGAATATTTCATACAATTCCTTCTATGGTCCTCTTCCAGACAAAGTAGTGAACTTGCTCCATTCTTCTCCATCATCATTCTTGGGCAATCCTGGCTTATGTGTCAGATGTTTTCCATCACATGGGCTGAATTGTTCCAAAAATAACAGCTTGAAGCCATGTGATGAGAACAATTCCACACATCCAAAAGGGCTGAGTAAAATTAAAGTTGTGATGATAGCACTTGGATCCACACTACTTGTAACATTTTTGTCACTTGGTCTTGTTTATGTGCTACACTATAAGCAAGATGTCAAGATTTTCCCCGAACAGCGGTCATCTTTACTCAAAAAAGTGATGAAGGCTACAGAGAACCTAAATGATAGGTATATTATTGGAAGAGGAGCACATGGAGTTATATACAAAGTTGAATTCAGTCCAGACAAAGTTTTTGTCATAAAGAAAATACCCTTTGCAGATGACAAAGCTCAGATCACAAGCATGAGCACAGAGATTGAAACCACTGGGAAGATTAGGCATCGAAATCTGGTAAGAATAAAAAACTTCTGGTTAAGAAAGGACTGTGGTCTAATTCTGTACAAGTACATGGAAAATGGAAGTCTTCATGATGTTCTGCATGAGAAGTATCCACCACCATCTTTAGAGTGGAGTGTCCGCTACAAGATTGCTGTTGGAATTGCACATGGACTTGAATATCTCCATCATGATTGTGATCCTGTCATAGTGCACAGAGACATCAAACCAAATAATATACTTTTGGATTCTGATATGGAGCCTCGTATTGCTGATTTTGGCATTGCCACTCTTCTAGACCATTCCTCTACTTCATTGCAATCTCTCTTTGTTCCTGGTACAATTGGGTATATTGCACCAGAGAATACTAATCCAACAGTGAGGAGTAGGAAGTCTGATGTGTATAGTTATGGAGTGGTTTTGCTAGAGCTGATAAGCAGAAAGAAGGTGCTAGATGATCCTTCATTTATGGAAGAAACAAATCTTGTGGGGTGGGTTAAATCTCTCTGGGAAAAAACAAGAGACATTGATTACATTGTTGACCTAAGCCTTAAAGAGGAACTTTTGGCCTCAAATGTGAGGGAACAAGTTGAACAAGTGCTTTTGGTGGCATTGAGATGTACTGAGAAGCATCCAGGTGAGAGACCAACAATGAGAGAAGTCGTCAAGGACTTGATAGTGAGATGCAAAGCTCCTGACATGAAGAGCTAG 3141 0.3941 MVRLNLFMLCLSALLYAVNALNTDGVALLSLQRHWTFVPPPINSSWNASDSTPCSWLGVQCDNNHNAIFLNLSGYSISGLLGPEIALLSHLQTLDLTSNNFSGKMPPELGNCSLLENLNLADNSISGQIPGSFRNLQNLVSLNIMNNTLTGQIPEFLFQLQHLEDLLLRQNNLSGRIPPSIGNCSVSNNRLEGTIPPLGSGRCNNLHYLDLSFNKFSGGIPSSLGNCIRLTEFYALNTNLGGSIPSSLGQLTELSILRLEFNHLTGQIPPEIGNCRSLKVLMLNNNELEGEIPSKLGMLSQLQDLRLHYNNLTGGIPVSLWKIPSLEYVHMYYNNLSGELPSELAELKQLKNITLYNNQFSGVIPQNLGINSSLQQLDISYNYFTGKIPPNLCFGQQLERLILASNQFQGGIPLDIGRCTTLMRLRLDGNNLTGPLPDFTSNSSLTYMDISVNNISGAIPTSLGNCTNLTDVILSHNNFSGNIPFELGSLVKLQRLNLSHNKLEGPLPPELSNCNKMEYFDAGFNSLNGSFPSSLRTWTGLTTLNLRENHFTGGIPTFLSEFKHLSDLHLGGNVFGGQIPRSIGELQNLLYELNLSANELTGEIPPEIGKLKLLQSLDISLNNLTGKIEVLEYLSSLVALNISYNSFYGPLPDKVVNLLHSSPSSFLGNPGLCVRCFPSHGLNCSKNNSLKPCDENNSTHPKGLSKIKVVMIALGSTLLVTFLSLGLVYVLHYKQDVKIFPEQRSSLLKKVMKATENLNDRYIIGRGAHGVIYKVEFSPDKVFVIKKIPFADDKAQITSMSTEIETTGKIRHRNLVRIKNFWLRKDCGLILYKYMENGSLHDVLHEKYPPPSLEWSVRYKIAVGIAHGLEYLHHDCDPVIVHRDIKPNNILLDSDMEPRIADFGIATLLDHSSTSLQSLFVPGTIGYIAPENTNPTVRSRKSDVYSYGVVLLELISRKKVLDDPSFMEETNLVGWVKSLWEKTRDIDYIVDLSLKEELLASNVREQVEQVLLVALRCTEKHPGERPTMREVVKDLIVRCKAPDMKS 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00523 1046 Gene3D Ribonuclease Inhibitor 21 185 IPR032675 -
Pumo11g00523 1046 Gene3D Ribonuclease Inhibitor 439 697 IPR032675 -
Pumo11g00523 1046 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Pumo11g00523 1046 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 443 1035 - -
Pumo11g00523 1046 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 20 181 - -
Pumo11g00523 1046 SMART serkin_6 758 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00523 1046 FunFam Serine/threonine-protein kinase-like protein CCR4 835 1046 - -
Pumo11g00523 1046 Pfam Leucine Rich repeat 89 103 IPR001611 GO:0005515
Pumo11g00523 1046 Pfam Leucine Rich Repeat 205 227 IPR001611 GO:0005515
Pumo11g00523 1046 Pfam Leucine Rich Repeat 492 514 IPR001611 GO:0005515
Pumo11g00523 1046 Gene3D Transferase(Phosphotransferase) domain 1 835 1042 - -
Pumo11g00523 1046 SUPERFAMILY RNI-like 361 660 - -
Pumo11g00523 1046 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 730 834 - -
Pumo11g00523 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Pumo11g00523 1046 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 396 681 - -
Pumo11g00523 1046 ProSiteProfiles Protein kinase domain profile. 758 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00523 1046 SUPERFAMILY Protein kinase-like (PK-like) 742 1036 IPR011009 -
Pumo11g00523 1046 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 184 395 - -
Pumo11g00523 1046 SUPERFAMILY RNI-like 70 408 - -
Pumo11g00523 1046 Gene3D Ribonuclease Inhibitor 186 438 IPR032675 -
Pumo11g00523 1046 Pfam Protein kinase domain 763 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00523 1046 Pfam Leucine rich repeat 276 336 IPR001611 GO:0005515
Pumo11g00523 1046 Pfam Leucine rich repeat 115 173 IPR001611 GO:0005515
Pumo11g00523 1046 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524
Pumo11g00523 1046 SMART LRR_typ_2 160 184 IPR003591 -
Pumo11g00523 1046 SMART LRR_typ_2 299 323 IPR003591 -
Pumo11g00523 1046 SMART LRR_typ_2 490 514 IPR003591 -
Pumo11g00523 1046 SMART LRR_typ_2 251 275 IPR003591 -
Pumo11g00523 1046 SMART LRR_typ_2 88 112 IPR003591 -
Pumo11g00523 1046 SMART LRR_typ_2 586 611 IPR003591 -
Pumo11g00523 1046 SMART LRR_typ_2 347 371 IPR003591 -
Pumo11g00523 1046 Gene3D Phosphorylase Kinase; domain 1 730 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00523 Pumo-Chr11 18751220 18754702 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00523 4 1035 Receptor kinase-like Gene Family AT1G17750 49.032 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo11g00523 Pkinase 5.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00523 - - qsu:112010432 1224.54