Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00516 ATGGAGGGTACTGAACCTGATATAAAAAGGCACCCCCTGGAAGACGCAGAAAATGAATGTCCAATATCCCCTGAGGTGGTGATTGATATGGGGCAGGAGAGTCAGACTCAGAACCCCAGTGATTCCTCTGTTACAGACGCTAACAAGGTCATTGATACTGAGAATGAGTGTACAGGTCCAAATGTTTCTCCTGTTGAACATAGTCACATGGAAATTAATGATGAATGCCAGACATCAAATATTTTCCATGATGACAAATTTCATACTAATGTCAGTAGTGGACAGCTGTGTGAGAACCCCTGTGCTACCTTTGTTGCAATGACCAGTACTGATGTAAAAAATGAGGAGGAAATATGTGTGGCACCAAAGATTGGCATGGAGTTTGAATCAGAAGACAATGCTTACAAATGTTATAGCAGGTATGCTGTCCTGAAAGGTTTCAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTGGTGTCCAGAAGATACACCTGCCATAGACAGGGTTATCGTCCTAACAAAAATGGTACATACTTGAGGAAATTGAAACAGGAAACAAGAACTGGTTGTTTGGCACACATGACTATTGCTCGTCAGCCGAATGGCAAGTTTCGTGTCACTAGTTATGAAACTGAGCACAATCATGAGTTAGTAACACCCTGTACTGCTCATATGTTACCATCACAGAAAAGATTGAGTTTTGCTCAAGCTGTTGAAGCAAACTTAACTGAGTCCGGGTTGGATGGAGTACCAAAACTGGGAATGGGATTTGACTCAGAGGAGCATGCATATGAATTTTATAATACATATGCTGGACATGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGTGCTGTGGCATCTAGACGATTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGACAAACAGGATATGAATGTAAAGAGACCTCGGAAGGATACTAGAATTGGATGTTTAGCACAACTGGTAATTTCTCGACAACCTGATGGTAGGTATCATGTTACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCATGTAGAGTGCACATGTTAAGATCACAAAAGAGGTTAGCTACAACTCAAGTTGAAAAGAACATTGTTGATGGATCCAATGTGCTGCCTATATCAACCTCTGAATCCAATTGCAAGGCTATTGAAGGCCTTGCTGATCTGGATTATGATCCCATAGGTCATGAATATAAACTTCCTTTCAAATGTGCAAGCAAAATAAAAGTGGGAGAAATTGAAAAGATTAAGCATCACTTCCAAAACAAGCAATCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCTGATGATCAAATAACTAATATATTTTGGGCTGATACAAAGATGATGGTAGACTATAGTGATTTTGGTGATGTTGTTTGTTTTGATAGTAGCTATAAATATTATAAGGACTCCCGGCCATTTGTTCCGTTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGCTGCACTTCTTTATAATGAATCTGTAGAATCTTTAAAGTGGCTGTTTCGAGTTTTCATTGAGGCAATGCCTGGACGCAAGCCAAAGACAATCCTTACAGATCTAGATGTACTTACAGCTGAAGCAATCAATTCCATATTACCTCAAACAAATCATCGAGTTTGTGTATGGCATGTGTATCAAGATGCCCTCAAGCAGCTGAGTCATGTTTCTGTTGGATCTGGTTCTTTTGTAACTGATTTGAGAAGCTGCTTTTTTGATCATGAGGAGGAGGATTATTTTGTTAATGCATGGAATGCTCTCCTGGACAAGTATGATCTGTGGGAAAATGAATGGTTGCAACAAATATATGGAAGCAGAGATCGATGGGCCATAGCATATGGAAGACAAATTTTTTGTGCTGACATAATAAGCATGCTACTGAGAGAAAATCTTACTGGCAACCTTAAAAAGTATCTAAAGCATGACTCAGACATTCTTCCGCTTTTCAAGTATCTTGTTAAGGTTGTTACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAGCCAGCGTATGCCACCACTGATGGGGGATATCATTACGTTAAAGCATGCAAGAGCTCCATACACACCAAAGATATTCGAGTTATTTCAGAAAGAATATGAAGCATGTTTGAATCTAGTGATAAAGCATTGCACTGAGAGTGGATCATTGTATAATTATAAAGTTAGCATGTATGAACAGGTACGAGAGTATTCGGTTACTTTTGATTCTTCTAATGAGACAGTCAGTTGCAGCTGTATGAAATTTGAGTATGTGGGAATCTTATGCTGCCATGCATTAAAAGTTCTTGACTATAGGAACATAAGGATAGTTCCATCCCAGTACATCTTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2445 0.3877 MEGTEPDIKRHPLEDAENECPISPEVVIDMGQESQTQNPSDSSVTDANKVIDTENECTGPNVSPVEHSHMEINDECQTSNIFHDDKFHTNVSSGQLCENPCATFVAMTSTDVKNEEEICVAPKIGMEFESEDNAYKCYSRYAVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGTYLRKLKQETRTGCLAHMTIARQPNGKFRVTSYETEHNHELVTPCTAHMLPSQKRLSFAQAVEANLTESGLDGVPKLGMGFDSEEHAYEFYNTYAGHVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRQKDKQDMNVKRPRKDTRIGCLAQLVISRQPDGRYHVTHFEEKHNHELVAACRVHMLRSQKRLATTQVEKNIVDGSNVLPISTSESNCKAIEGLADLDYDPIGHEYKLPFKCASKIKVGEIEKIKHHFQNKQSKNPSFFYAFQLDADDQITNIFWADTKMMVDYSDFGDVVCFDSSYKYYKDSRPFVPFLGINNHQQMTIFGAALLYNESVESLKWLFRVFIEAMPGRKPKTILTDLDVLTAEAINSILPQTNHRVCVWHVYQDALKQLSHVSVGSGSFVTDLRSCFFDHEEEDYFVNAWNALLDKYDLWENEWLQQIYGSRDRWAIAYGRQIFCADIISMLLRENLTGNLKKYLKHDSDILPLFKYLVKVVTDWHYKELEANYDMSQRMPPLMGDIITLKHARAPYTPKIFELFQKEYEACLNLVIKHCTESGSLYNYKVSMYEQVREYSVTFDSSNETVSCSCMKFEYVGILCCHALKVLDYRNIRIVPSQYILKRWTKDARV 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00516 814 ProSiteProfiles Zinc finger SWIM-type profile. 759 795 IPR007527 GO:0008270
Pumo11g00516 814 Pfam MULE transposase domain 479 572 IPR018289 -
Pumo11g00516 814 MobiDBLite consensus disorder prediction 29 45 - -
Pumo11g00516 814 Pfam FAR1 DNA-binding domain 138 223 IPR004330 -
Pumo11g00516 814 Pfam FAR1 DNA-binding domain 270 358 IPR004330 -
Pumo11g00516 814 Pfam SWIM zinc finger 748 794 IPR007527 GO:0008270
Pumo11g00516 814 MobiDBLite consensus disorder prediction 1 45 - -
Pumo11g00516 814 MobiDBLite consensus disorder prediction 1 18 - -
Pumo11g00516 814 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 114 241 IPR031052 GO:0006355
Pumo11g00516 814 SMART 26again6 770 797 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00516 Pumo-Chr11 18449752 18454264 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pumo11g00516 MULE 1.8e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00516 K17604 - gmx:102659753 1560.81