Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00503 ATGGGAAGACAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATCCTCAATAATGGTATCCACTGCTGGAGAACAGTTCCCAAGCTAGCAGGCTTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGACCAAATTATACAACTACATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAAGTTGAAGCTCCTTGGTTTGGATCCTTTGACCCTGAAGCCAACTGAGCAAAAGGAACAGTCTGGTGATGACAAAAATAAGATAGAATTGCAACCAAACACTTCAAAAGGGTCTGAACACGGTGTGGAGAACAAGTCCTTGGACATGCATGGCACAGGAGAAGTGGCAAAAACAGAAGGGAAAATGGAAGAAAACAAGGTGACATGGGATGATACCACAGGATTTTTAAACAATTATGAAATGCTGTGCTCACAGTTGGACTTGGGATCATGGATGAGCCAAGAAACCAAAACCAGCACTAGCTCTTATTGTAGTTCTTCCTCTTTCTCACTGGATGATTCTAGCAACCTTTCTGTTGGTGAATCCAATTACCTTCAGGAAAGTTCCTTACAGCAATGGGTTGATGGTTTGGATTCCATTCTCTCATGGGATAGCTTCAATCCTCTTGAGAAAGATTTCCCCTTCTTGGAAAATAGGCAATAA 825 0.417 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKKLKLLGLDPLTLKPTEQKEQSGDDKNKIELQPNTSKGSEHGVENKSLDMHGTGEVAKTEGKMEENKVTWDDTTGFLNNYEMLCSQLDLGSWMSQETKTSTSSYCSSSSFSLDDSSNLSVGESNYLQESSLQQWVDGLDSILSWDSFNPLEKDFPFLENRQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00503 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo11g00503 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo11g00503 274 CDD SANT 16 61 IPR001005 -
Pumo11g00503 274 Gene3D - 11 67 - -
Pumo11g00503 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 229 - -
Pumo11g00503 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo11g00503 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo11g00503 274 FunFam MYB transcription factor 68 129 - -
Pumo11g00503 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo11g00503 274 CDD SANT 70 110 IPR001005 -
Pumo11g00503 274 MobiDBLite consensus disorder prediction 155 178 - -
Pumo11g00503 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g00503 274 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pumo11g00503 274 SMART sant 13 63 IPR001005 -
Pumo11g00503 274 SMART sant 66 114 IPR001005 -
Pumo11g00503 274 FunFam MYB transcription factor 11 67 - -
Pumo11g00503 274 MobiDBLite consensus disorder prediction 127 178 - -
Pumo11g00503 274 Gene3D - 69 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00503 Pumo-Chr11 18221142 18222555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00503 1 157 MYB Transcription Factor Family AT5G16600 65.680 1.07e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g00503 Myb_DNA-binding 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00503 K09422 - gmx:100819471 498.049