Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00501 ATGGACACTTACATTGATTATTTGATTCATGCTGATGGGTATATGCCATGGCAAGGACTAGAGGGCCCTTTTGGTATGGATACTTGCTTTTATGCCGAGTACCACAACACTGGCCCCGGTTTAGACAAATCCAAGCGTGTCAATTGGGCTGGGATTTGGAACCTCAATTCAAAAGCTGCACATTGGTTTTCACCATCCAAGTTCTTTCATGGAACTGATTGGATTGAGGTTACTGAGATTCCTTGCTTCCTTGATGTGCCCATGCAACATAAGTACAAAAAGACTATACTTAATTGGTGA 300 0.4233 MDTYIDYLIHADGYMPWQGLEGPFGMDTCFYAEYHNTGPGLDKSKRVNWAGIWNLNSKAAHWFSPSKFFHGTDWIEVTEIPCFLDVPMQHKYKKTILNW 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00501 99 SUPERFAMILY Pectin lyase-like 1 82 IPR011050 -
Pumo11g00501 99 PANTHER PECTINESTERASE 1 76 - -
Pumo11g00501 99 Gene3D - 1 87 IPR012334 -
Pumo11g00501 99 Pfam Pectinesterase 1 71 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00501 Pumo-Chr11 18171544 18171843 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00501 1 81 Carbohydrate Esterase AT5G49180 41.975 5.36e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00501 K01051 - gmx:100820556 191.045