Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00481 ATGGATGAGAGAACAAGAATAAGCTCACCCGATATAGACCCAAAAAGCGGCTTCAACCGCGCTTCTAGAAGTTTCCACAGCCTCAGCCCACCACTCCTCCTCCCTCCGCCGAACGCCGCCGTCTCCGCCGCAACTTACACTCTCTCCCTCCGCCGCAACTCGCTGCTGCCGGACTCCGTCACCGCCATTATCGACTCCGCCACCGGCCACCGCCTCTCCTACGGCGAGCTCATCCACCGCGTCGAAACCCTAGCCGCGAACCTCACCACCGTCCTCAAACTCACCAAAGGCAACACCGCGCTCGTTCTCTCCCCAAACCTAATCCAAATTCCGATCCTCTACTTCGCACTCCTCTCCCTCGGCGTGGTCCTCTCCCCCGCGAACCCTCTCTCCACGCGCTCCGAGCTCACGCGCTTCTTCAACATCACCAAACCCGCAATCGTATTCACAGTCGCTTCAATCGCTGAAAAAACACGCGAGTTTCATGTCCGAACCGTCCTCCTCGACTTGCCCGAGTTCGACTCGCTCACGAAGACTCAGATTCATACTGCGAGTCCACTCGTTTCTCCCGCGCGGGTGACTCAGTCCGACGTGGCAGCGATTCTGTTCTCCTCCGGCACCACGGGGGCGGTGAAGGGCGTGATGCTCACGCACCGTAACATAACGGCGTTGGCCGCGGGATACGTCGCCGTTAGGGTGAACAGAGAGCACCCCGCGGTGTTCCTCATTACGACGCCGTTTTTCCACGTGTACGGGTTCGTGTTGATCTTGAGGGCGGTGGTTATGTCGGACACGGTGGTGGTGATGGAAAGGTTCAGTTTGAGGGGGATGCTGAGCGCCGTGGAGAGGTTCCGAGTGACGAACCTCGCGGCGGTGCCGCCGCTGGTGGTGGCTGTGACGAAAGACGGCGTGACGGACGGGTACGATTTGAGGTCGCTGGCGGGAATAGCGTGCGGTGGGACCCCACTGGGAAAGGAAACTGCCGTTGCTTTCAAAGCCAAGTTCCCCAACGTCGTCATCATCCAGGGATACGGTTTAACTGAGTCTGCATGTACCCGAACCACTCCGGAGGAGGCTAATCGGGTGGGAACAACAGGTAGACTGATAGCAAATATAGAAGCCAAAATTGTGAACCCAGAAACAGGGGAAGCCATGTTTCCTGGTGAACAAGGAGAACTCTGGATCAAAGGACCTTATGTTATGAAAGGTTATGCTGGTGACCCAAAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGATCTCTGTTATTTTGATGATGAGGGTTTCTTGTATGTTGTAGATAGGTTGAAAGAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCCGCAGAGCTAGAAGAGTTGCTCCTATCTCATCCAGAGATAAATGATGCTGCAGTTATCCCATACCCTGATGAAGTAGCAGGCCAGGTGCCCATGGCGTTTGTGGTAAGACAACCACAAAGTTCCCTTAGCGAAGCAGAAATAATTGATTTTGTTGCCAAACAGGTTTCACCGTACAAGAAAATAAGGCGTGTAGCATTTGTTAATTCCATACCCAAGAATGCTTCGGGAAAGATACTAAGGAAGGACTTAAAACTTGCACTCTCTAGGTTGTAA 1632 0.5404 MDERTRISSPDIDPKSGFNRASRSFHSLSPPLLLPPPNAAVSAATYTLSLRRNSLLPDSVTAIIDSATGHRLSYGELIHRVETLAANLTTVLKLTKGNTALVLSPNLIQIPILYFALLSLGVVLSPANPLSTRSELTRFFNITKPAIVFTVASIAEKTREFHVRTVLLDLPEFDSLTKTQIHTASPLVSPARVTQSDVAAILFSSGTTGAVKGVMLTHRNITALAAGYVAVRVNREHPAVFLITTPFFHVYGFVLILRAVVMSDTVVVMERFSLRGMLSAVERFRVTNLAAVPPLVVAVTKDGVTDGYDLRSLAGIACGGTPLGKETAVAFKAKFPNVVIIQGYGLTESACTRTTPEEANRVGTTGRLIANIEAKIVNPETGEAMFPGEQGELWIKGPYVMKGYAGDPKATSATLVDGWLRTGDLCYFDDEGFLYVVDRLKELIKYKGYQVAPAELEELLLSHPEINDAAVIPYPDEVAGQVPMAFVVRQPQSSLSEAEIIDFVAKQVSPYKKIRRVAFVNSIPKNASGKILRKDLKLALSRL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00481 543 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Pumo11g00481 543 Gene3D - 442 541 IPR045851 -
Pumo11g00481 543 Gene3D - 38 441 IPR042099 -
Pumo11g00481 543 FunFam 4-coumarate--CoA ligase 2 442 542 - -
Pumo11g00481 543 SUPERFAMILY Acetyl-CoA synthetase-like 55 537 - -
Pumo11g00481 543 CDD 4CL 53 536 - -
Pumo11g00481 543 Pfam AMP-binding enzyme 60 446 IPR000873 -
Pumo11g00481 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 537 - -
Pumo11g00481 543 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00481 Pumo-Chr11 17616929 17623575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00481 12 536 Monolignol Biosynthesis Gene Families AT5G63380 50.368 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00481 K01904 - gmx:100784234 838.95