Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00478 ATGGATGAGAGAACAAGAATAAGCTCATCCGATATAGACCCAAAAAGCGGCTTCAACCGCGCTTCCAGAACCTTCCACAGCCTCAAGCCACCACTCCGCCTCCCTCCTCCCAACGCCACCGTCTCCGCCGCATCCTACGCCTTCTCCCTCCGCCAGAACTCACCGTTTCCGGACTCCACTACCGCCATCATCGACGCGGCCACCGGCCACCGCCTCTCCTACGGCGAGCTCATCCACCGCGCCGAAACCCTAGCCTCGAATCTCAACACTGTCCTCAAACTCTCCAAAGGCGACACCGCGCTGGTTCTCTCCCTAAACCTCATCCAAGTTCCGATCCTCTGCTTCGCACTCCTCTCCCTCGGCGTGGTCGTCTCCCCCGCGAACCCTCTCTCCACGCGCTCCGAGCTCACGCGCCTCTTCAACATCAGCAAACCATCAATCGTATTTGCAGTATCTTCAGTCGTTGAAAAAACACGCGACTTTCATGTTCGAACAGTTCTCCTCGACTCGCCCGAGTTCGACTCGCTCACGAAGACTCAGATCCACACTCCGAGTCCACCCGTTTCCCCCGCGCGGGTGACTCAGTCCGACGTGGCAGCGATTCTGTACTCCTCCGGCACCACGGGGATGGTGAAGGGCGTGATGCTGACGCACCGTAACTTAACGGCGATGGCCGCCGGATACGACGCCGTTAGGGTGAATAGAAAGCACCCCGCGGTGTTCCTCTTCACGATGCCGTTTTTCCACGTGTACGGGTTCACGTTCAGCTTGAGGGCGATGGTGCTGTCGGAGACGGTGGTGGTGATGGAGAGGTTCAGTATGAGGGGGATGCTGAGCGCCGTGGAGAGGTTCCGAGTGACGCACCTCGCGGTGGTGCCGCCGCTGATGGTGGCTTTGACGAAGGACAGCGTCACCGACGGGTACGATTTGAGGACGTTGGAAGGGGTGGCGTGCGGTTCGGCTCCACTGGGAAAGGAAACCGCTGAGGCTTTCAAAGCAAAGTTCCCCAGCGTCGTCATCGGCCAGGGATACGGTTTAACTGAGTCAACTGCTGGGGTTGTTCGAACCCCTCCAGAGGAAGCTAATCGGGTAGGAACACCAGGCAGACTGGTGGCAGGGGTGGAAGCCAAAATTGTGAACCCTAACACAGGAGAAGCCATGTTCCCTCCTGAACAAGGAGAACTTTGGATCAAAGGACCTACCATTATGAAAGGTTATGCTGGTGACCCAAAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGATCTCTGTTATTTTGATGATGAGGGTTTCTTGTATGTTGTAGATAGGTTGAAAGAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCGGCAGAGCTAGAGCAGTTGCTCCTATCTCACCCAGAGATAAATGATGCTGCAGTTATTCCCAACAGCGGCGACGACGATTATGGTGGTGGTGGCAGCAATGATTATGACAATAGTAGTGGTGGTGGTCATGGCAGTGGTGGTGGCGGCAACGGCGATGGTCATGGTGGTGGTGACGGCGGCGACGGTCATGACGGTGGTGGTCATGGCAGTGGTGATGATGGGTTCGAGATATTTTAG 1602 0.5618 MDERTRISSSDIDPKSGFNRASRTFHSLKPPLRLPPPNATVSAASYAFSLRQNSPFPDSTTAIIDAATGHRLSYGELIHRAETLASNLNTVLKLSKGDTALVLSLNLIQVPILCFALLSLGVVVSPANPLSTRSELTRLFNISKPSIVFAVSSVVEKTRDFHVRTVLLDSPEFDSLTKTQIHTPSPPVSPARVTQSDVAAILYSSGTTGMVKGVMLTHRNLTAMAAGYDAVRVNRKHPAVFLFTMPFFHVYGFTFSLRAMVLSETVVVMERFSMRGMLSAVERFRVTHLAVVPPLMVALTKDSVTDGYDLRTLEGVACGSAPLGKETAEAFKAKFPSVVIGQGYGLTESTAGVVRTPPEEANRVGTPGRLVAGVEAKIVNPNTGEAMFPPEQGELWIKGPTIMKGYAGDPKATSATLVDGWLRTGDLCYFDDEGFLYVVDRLKELIKYKGYQVAPAELEQLLLSHPEINDAAVIPNSGDDDYGGGGSNDYDNSSGGGHGSGGGGNGDGHGGGDGGDGHDGGGHGSGDDGFEIF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00478 533 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Pumo11g00478 533 Pfam AMP-binding enzyme 56 448 IPR000873 -
Pumo11g00478 533 MobiDBLite consensus disorder prediction 472 533 - -
Pumo11g00478 533 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 475 - -
Pumo11g00478 533 MobiDBLite consensus disorder prediction 1 20 - -
Pumo11g00478 533 SUPERFAMILY Acetyl-CoA synthetase-like 59 476 - -
Pumo11g00478 533 Gene3D - 444 485 IPR045851 -
Pumo11g00478 533 Gene3D - 34 443 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00478 Pumo-Chr11 17560330 17569789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00478 12 480 Monolignol Biosynthesis Gene Families AT5G63380 48.262 2.61e-146 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00478 K01904 - gmx:100801143 788.875